View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20874_high_3 (Length: 393)
Name: NF20874_high_3
Description: NF20874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20874_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 30889464 - 30889105
Alignment:
| Q |
17 |
tcttcaactccacgaattctgcgcagaactctcttagcctcagatattcttcctttacttacaagccaaggaggagattcggggaggtaaaagacggcga |
116 |
Q |
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| T |
30889464 |
tcttcaactccacgaattctgcgcagaactctcttagcctcagatattcttcctttacttacaagccaaggaggagattcggggaggtaaaagacggcga |
30889365 |
T |
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| Q |
117 |
gnnnnnnntaagcaacagaatgaatggaaacaataccaagcatgcctctccaacttggtgaatccatcaaggatatagagaaaaccaagatgtaagccaa |
216 |
Q |
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| T |
30889364 |
gaaaaaaataagcaacagaatgaatggaaacaataccaagcatgcctctccaacttggtgaatccatcaaggatatagagaaaaccaagatgtaagccaa |
30889265 |
T |
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| Q |
217 |
aaacattcccaaagaggatgaaaacataggaagagtattgagcaagcctcttatatcaggtggtgctatctcagatatgtagagaggagttagactgatg |
316 |
Q |
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| T |
30889264 |
aaacattcccaaagaggatgaaaacataggaagagtattgagcaagcctcttatatcaggtggtgctatctcagatatgtagagaggagttagactgatg |
30889165 |
T |
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| Q |
317 |
gctaatgcaattgcaattccattcaatagccttgaaaacagtacaacaggaacatttgga |
376 |
Q |
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| T |
30889164 |
gctaatgcaattgcaattccattcaatagccttgaaaacagtacaacaggaacatttgga |
30889105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 9953177 - 9953218
Alignment:
| Q |
263 |
cctcttatatcaggtggtgctatctcagatatgtagagagga |
304 |
Q |
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| T |
9953177 |
cctcttatatcaggtggtgctatctcagatatgtaaagagga |
9953218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 19696005 - 19696046
Alignment:
| Q |
263 |
cctcttatatcaggtggtgctatctcagatatgtagagagga |
304 |
Q |
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| T |
19696005 |
cctcttatatcaggtggtgctatctcagatatgtaaagagga |
19696046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 19695871 - 19695967
Alignment:
| Q |
129 |
caacagaatgaatggaaacaataccaagcatgcctctccaacttggtgaatccatcaaggatatagagaaaaccaagatgtaagccaaaaacattcc |
225 |
Q |
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| T |
19695871 |
caacagaaggaatagaaataacactaagcataactctccaactaggcgatggcatcaaggatataatgaaaacaagaatgtaagccaaaaacattcc |
19695967 |
T |
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