View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20874_high_4 (Length: 262)
Name: NF20874_high_4
Description: NF20874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20874_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 22996592 - 22996804
Alignment:
| Q |
22 |
tgagtcatcatctgaataagttatttgaatttttagcatataggacagtacactagcgagtttatattcatcattaactcctctcacatcagatttattt |
121 |
Q |
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| T |
22996592 |
tgagtcatcatctatataagttatttggatttttagcatataggacagtacactagcgagtttatattcattattaactcctctcacatcagatttattt |
22996691 |
T |
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| Q |
122 |
catattgttaataacttttgctttgttatgttgataaaatgactag-atttactctttaacctaattctttgcctatgatgttaattcttatactccatg |
220 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || ||| ||||||||| || || ||||||||||||| || |
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| T |
22996692 |
tgtaatgttaataacttttgctttgttatgttgataaaatgactagaatttactctttga-ctgattatttgcctataatttttattcttatactccgtg |
22996790 |
T |
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| Q |
221 |
agaaatggagtata |
234 |
Q |
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|||||||||||||| |
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| T |
22996791 |
agaaatggagtata |
22996804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 82 - 235
Target Start/End: Original strand, 923980 - 924133
Alignment:
| Q |
82 |
tttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgttatgttgataaaatgactagatttactctttaac |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
923980 |
tttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgttatgttgataaaatgactggatttactctttaac |
924079 |
T |
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| Q |
182 |
ctaattctttgcctatgatgttaattcttatactccatgagaaatggagtatac |
235 |
Q |
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| T |
924080 |
ctaattctttgcctatgatttttattcttattctccatgagaaatggagtatac |
924133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 22964946 - 22964762
Alignment:
| Q |
50 |
atttttagcatataggacagtacactagcgagtttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgtta |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| || |||||||||| |||||||||||| |
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| T |
22964946 |
atttttagcatataggacagtacactagcgagtttatattcattattaactcctctcatatcaaatttatttcgtaatgttaataac-tttgctttgtta |
22964848 |
T |
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| Q |
150 |
tgttgataaaatgactag-atttactctttaacctaattctttgcctatgatgttaattcttatactccatgagaaatggagtata |
234 |
Q |
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| T |
22964847 |
tgttgataaaataactagaatatactcttttgactgattctttgcctataatttttattcttatactccatgaaaaatggagtata |
22964762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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