View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20874_low_1 (Length: 413)
Name: NF20874_low_1
Description: NF20874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20874_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 2 - 397
Target Start/End: Original strand, 35354567 - 35354962
Alignment:
| Q |
2 |
catcattattgttatttt-aattcgaagaaaagcatgcacacataaaatataaaaattacccgtaaaatcttcttgtactcagagagcaaatacgtgaca |
100 |
Q |
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| T |
35354567 |
catcattattattatttttaattcgaagaaaatcatgcacacataaaatataaaaattacccgtaaaatcttcttgtactcagagagcaaatacgtgaca |
35354666 |
T |
|
| Q |
101 |
tattctggtaaagcatactggcgggatcttagggagtttggcaccaagtagtagttattcacaaaatcattacctccacatgtaataaggattagtgctc |
200 |
Q |
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| T |
35354667 |
tattctggtaaagcatactggcgggatcttagggagtttggcaccaagtagtagttattcacaaaatcattacctccacatgtaataaggattagtgctc |
35354766 |
T |
|
| Q |
201 |
catttattaatttcttagcttcttttttaccaattagatcactcacccttttctggtattcttcgaaaaaatctagctgtttgtacattctgattacttc |
300 |
Q |
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| T |
35354767 |
catttattaatttcttagcttcttttttaccaattagatcactcacccttttctggtattcttcgaaaaaatctagctgtttgtacattctgattacttc |
35354866 |
T |
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| Q |
301 |
tatctgcaataatatatgtatacaatatgatttcattgcatccataaataataaaactatatacaaaattcaaattaatgtttacttatgtttcatc |
397 |
Q |
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| T |
35354867 |
tatctgcaataatatatgtatacaatatgatttcattgcatccataaataataaaactatatacaaaattcaaattaatg-ttacttatgtttcatc |
35354962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 171
Target Start/End: Original strand, 7386905 - 7386936
Alignment:
| Q |
140 |
ggcaccaagtagtagttattcacaaaatcatt |
171 |
Q |
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| T |
7386905 |
ggcaccaagtagtagttattcacaaaatcatt |
7386936 |
T |
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