View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20875_high_1 (Length: 381)
Name: NF20875_high_1
Description: NF20875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20875_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 51757236 - 51756882
Alignment:
| Q |
12 |
attctcaacgagcacaacaca---atatatcaaattaaattagcaaataaatgtatacattcaaaacagtttcaaactgatcatatcacaatcacctaat |
108 |
Q |
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| T |
51757236 |
attctcaacgagcacaacacattaatatatcaaattaaattagcaaataaatgtatacattcaaaacagtttcaaactgatcatatcacaatcacctaat |
51757137 |
T |
|
| Q |
109 |
acatatgctacatgtgaaagggcaatacgataaataatctattggacaattcttgagttacatttttcgtttaatatttaatactttttcatatgccaat |
208 |
Q |
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| T |
51757136 |
acatatgctatatgtgaaagggcaatacgataaataatctattggacaattcttgggttacatttttcgtttattatttaatactttttcatatgccaat |
51757037 |
T |
|
| Q |
209 |
gaagattaaaaatatgttaaattattgtcaagagttattattatatgcaatggcatattctcaatatgataaggaatattactcaaatttgttttccttt |
308 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51757036 |
gaagattaaaaatatgtgaaattattgtcaagagttattattatatgcaatggcatattctcaatatgataaggaatattactcaaatttgttttccttt |
51756937 |
T |
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| Q |
309 |
tctactactagtgggcactgatgtagagttgtgggaatcttattacaattagtat |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51756936 |
actactactagtgggcactgatgtagagttgtgggaatcttattacaattagtat |
51756882 |
T |
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