View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20875_high_2 (Length: 248)
Name: NF20875_high_2
Description: NF20875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20875_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 46127808 - 46127997
Alignment:
| Q |
1 |
taactctgtcatgcaactaatgcctacatgtataaacaacaatgcttgttcctatttatttgaaaattattctacttgcaatggttataa-------ttg |
93 |
Q |
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| T |
46127808 |
taactctgtcatgcaactaatgcctacatgtataaacaacaatacttgttcctatttatttgaaaattattctacttgcaatggttataattgaaacttg |
46127907 |
T |
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| Q |
94 |
aatggctttctttgacatgccgggtgacaaagttgacttctctcccaaccactgtacatagttagctatctagaatcgcacaagagcttcagac |
187 |
Q |
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| T |
46127908 |
aaaggctttctttgacatgccgggtgacaaagttgact----tcccaaccactgtacatggttagctatctagaatcgcacaagagcttcagac |
46127997 |
T |
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