View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20875_low_3 (Length: 239)

Name: NF20875_low_3
Description: NF20875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20875_low_3
NF20875_low_3
[»] chr1 (5 HSPs)
chr1 (150-239)||(32017575-32017664)
chr1 (149-215)||(38460681-38460747)
chr1 (150-215)||(38459410-38459475)
chr1 (176-214)||(32018155-32018193)
chr1 (147-215)||(26853095-26853164)
[»] chr3 (3 HSPs)
chr3 (19-62)||(30765367-30765410)
chr3 (149-215)||(30626471-30626537)
chr3 (145-201)||(36369890-36369946)
[»] chr8 (1 HSPs)
chr8 (149-201)||(3528786-3528838)
[»] chr7 (3 HSPs)
chr7 (149-220)||(2564737-2564808)
chr7 (154-215)||(11702266-11702327)
chr7 (150-200)||(22982783-22982833)
[»] chr5 (3 HSPs)
chr5 (150-201)||(4549253-4549304)
chr5 (153-215)||(12423282-12423344)
chr5 (148-215)||(43514473-43514541)
[»] chr2 (4 HSPs)
chr2 (149-211)||(11590780-11590843)
chr2 (150-215)||(11590148-11590213)
chr2 (148-201)||(44996393-44996446)
chr2 (149-201)||(45628545-45628597)
[»] chr4 (1 HSPs)
chr4 (148-215)||(44891721-44891789)
[»] chr6 (2 HSPs)
chr6 (154-211)||(19750141-19750199)
chr6 (150-215)||(19749510-19749575)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 32017575 - 32017664
Alignment:
Q  150 gagaaatgctagcgtcacactctctaacactctctttgacacactccaataagaatttgccacatcctccacttttactgctcctttaac 239  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  32017575 gagaaaggctagcgtcacactctctaacactctctttgacacactccaataagaatttgccacatcccccacttttattgctcctttaac 32017664  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 38460747 - 38460681
Alignment:
Q  149 tgagaaatgctagcgtcacactctctaacactctctttgacacactccaataagaatttgccacatc 215  Q
    ||||||||||||| | ||||||| ||||||| |||||| |||||||||||||| |||| ||||||||    
T  38460747 tgagaaatgctagggacacactccctaacacactctttaacacactccaataaaaattagccacatc 38460681  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 38459410 - 38459475
Alignment:
Q  150 gagaaatgctagcgtcacactctctaacactctctttgacacactccaataagaatttgccacatc 215  Q
    |||||||||||| | ||||||| ||||||| |||||| |||||||||||||| |||| ||||||||    
T  38459410 gagaaatgctagggacacactccctaacacactctttaacacactccaataaaaattagccacatc 38459475  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 32018193 - 32018155
Alignment:
Q  176 acactctctttgacacactccaataagaatttgccacat 214  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  32018193 acactctctttgacacactccaatatgaatttgccacat 32018155  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 26853164 - 26853095
Alignment:
Q  147 tttgagaaatgctagcgtcacactctctaacactctc-tttgacacactccaataagaatttgccacatc 215  Q
    ||||||||||||||| | ||||||| ||||||| ||| ||| |||||||||||| | |||||||||||||    
T  26853164 tttgagaaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatc 26853095  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 30765367 - 30765410
Alignment:
Q  19 aagtaaatctatgaacattaaataatttgattgaaaggcattgg 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30765367 aagtaaatctatgaacattaaataatttgattgaaaggcattgg 30765410  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 30626471 - 30626537
Alignment:
Q  149 tgagaaatgctagcgtcacactctctaacactctctttgacacactccaataagaatttgccacatc 215  Q
    ||||||||||||| ||||||||| ||||||| |||||| |||||||||||||| |||| ||||||||    
T  30626471 tgagaaatgctagggtcacactccctaacacactctttaacacactccaataaaaattagccacatc 30626537  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 36369946 - 36369890
Alignment:
Q  145 tttttgagaaatgctagcgtcacactctctaacactctctttgacacactccaataa 201  Q
    ||||||||||||| ||| ||||||||| ||||||  |||||| ||||||||||||||    
T  36369946 tttttgagaaatgttagggtcacactccctaacatactctttaacacactccaataa 36369890  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 3528838 - 3528786
Alignment:
Q  149 tgagaaatgctagcgtcacactctctaacactctctttgacacactccaataa 201  Q
    ||||||||||||| | ||||||| ||||||| |||||||||||||||||||||    
T  3528838 tgagaaatgctagggacacactccctaacacactctttgacacactccaataa 3528786  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 2564737 - 2564808
Alignment:
Q  149 tgagaaatgctagcgtcacactctctaacactctctttgacacactccaataagaatttgccacatcctcca 220  Q
    ||||||||||||| ||||||||| ||||||  |||||| |||||||||||||  |||| |||||||| ||||    
T  2564737 tgagaaatgctagggtcacactccctaacatactctttaacacactccaatagaaattagccacatcatcca 2564808  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 11702266 - 11702327
Alignment:
Q  154 aatgctagcgtcacactctctaacactctctttgacacactccaataagaatttgccacatc 215  Q
    |||||||| | ||||| ||||||||| ||||||||||||||||||| | |||| ||||||||    
T  11702266 aatgctagggacacaccctctaacacactctttgacacactccaatgaaaattagccacatc 11702327  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 22982783 - 22982833
Alignment:
Q  150 gagaaatgctagcgtcacactctctaacactctctttgacacactccaata 200  Q
    ||||||||| || ||||||||| ||||||| |||||| |||||||||||||    
T  22982783 gagaaatgccagggtcacactccctaacacactctttaacacactccaata 22982833  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 4549304 - 4549253
Alignment:
Q  150 gagaaatgctagcgtcacactctctaacactctctttgacacactccaataa 201  Q
    |||||||||||| | ||||||| ||||||| |||||||||||||||||||||    
T  4549304 gagaaatgctagggacacactccctaacacactctttgacacactccaataa 4549253  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 12423344 - 12423282
Alignment:
Q  153 aaatgctagcgtcacactctctaacactctctttgacacactccaataagaatttgccacatc 215  Q
    ||||||||  ||||||||| ||||||| |||||| |||||||||||||| |||| ||||||||    
T  12423344 aaatgctaaggtcacactccctaacacactctttaacacactccaataaaaattagccacatc 12423282  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 43514541 - 43514473
Alignment:
Q  148 ttgagaaatgctagcgtcacactctctaacactctc-tttgacacactccaataagaatttgccacatc 215  Q
    |||||||||||||| | ||||||| ||||||| ||| ||| |||||||||||| | |||||||||||||    
T  43514541 ttgagaaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatc 43514473  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 11590843 - 11590780
Alignment:
Q  149 tgagaaatgctagcgtcacactctctaacactctc-tttgacacactccaataagaatttgcca 211  Q
    ||||||||||||  ||||||||||||||||| ||| |||||||||||||||| | |||||||||    
T  11590843 tgagaaatgctatggtcacactctctaacacactcttttgacacactccaatcataatttgcca 11590780  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 11590148 - 11590213
Alignment:
Q  150 gagaaatgctagcgtcacactctctaacactctctttgacacactccaataagaatttgccacatc 215  Q
    |||||||||||| |||| || ||||||||| ||||||||||||||||| ||| | | |||||||||    
T  11590148 gagaaatgctagggtcaaaccctctaacacactctttgacacactccagtaatattatgccacatc 11590213  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 44996446 - 44996393
Alignment:
Q  148 ttgagaaatgctagcgtcacactctctaacactctctttgacacactccaataa 201  Q
    |||||||||||||| | ||||||| ||||||| |||| | ||||||||||||||    
T  44996446 ttgagaaatgctagagacacactccctaacacactctctaacacactccaataa 44996393  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 45628597 - 45628545
Alignment:
Q  149 tgagaaatgctagcgtcacactctctaacactctctttgacacactccaataa 201  Q
    ||||||||||||| | ||||||| ||||||| |||| | ||||||||||||||    
T  45628597 tgagaaatgctagggacacactccctaacacactctctaacacactccaataa 45628545  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 44891721 - 44891789
Alignment:
Q  148 ttgagaaatgctagcgtcacactctctaacactctc-tttgacacactccaataagaatttgccacatc 215  Q
    |||||||||||||| | ||||||| ||||||| ||| ||| |||||||||||| | |||||||||||||    
T  44891721 ttgagaaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatc 44891789  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 19750199 - 19750141
Alignment:
Q  154 aatgctagcgtcacactctctaacactctc-tttgacacactccaataagaatttgcca 211  Q
    |||||||  ||||||||||||||||| ||| |||||||||||||||| | |||||||||    
T  19750199 aatgctatggtcacactctctaacacactcttttgacacactccaatcataatttgcca 19750141  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 19749510 - 19749575
Alignment:
Q  150 gagaaatgctagcgtcacactctctaacactctctttgacacactccaataagaatttgccacatc 215  Q
    |||||||||||  |||| || ||||||||| ||||||||||||||||| ||| | | |||||||||    
T  19749510 gagaaatgctaaggtcaaaccctctaacacactctttgacacactccagtaatattatgccacatc 19749575  T

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