View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20876_high_8 (Length: 250)
Name: NF20876_high_8
Description: NF20876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20876_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 39929368 - 39929601
Alignment:
| Q |
1 |
gtccataatggtaatattccaactannnnnnngaaatcttccacttgttgaattgtgcatagtctccatgatgatttcttaattgtgccatttgagtgta |
100 |
Q |
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| T |
39929368 |
gtccataatggtaatattccaactatttttttgaaatcttccacttgttgaattgtgcatagtctccatgatgatttcttaattgtgccatttgagtgta |
39929467 |
T |
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| Q |
101 |
ggtctgcatcagttattagagcggcacggttgaaaaacctgcatttgcatatcgatcagcacatcatatatagcagaaatttacaagcatattttgaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39929468 |
ggtctgcatcagttattagagcggcacggttgaaaaacctgcatttgcatatcgatcagcacatcatatatagcaaaaatttacaagcatattttgaatt |
39929567 |
T |
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| Q |
201 |
caatgctaagtttatggaacttctagtttctatt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
39929568 |
caatgctaagtttatggaacttctagtttctatt |
39929601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 39695063 - 39694932
Alignment:
| Q |
33 |
gaaatcttccacttgttgaattgtgcatagtctccatgatgatttcttaattgtgccatttgagtgtaggtctgcatcagttattagagcggcacggttg |
132 |
Q |
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| T |
39695063 |
gaaatcatccacttgttgaactgtgcatagtctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattg |
39694964 |
T |
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| Q |
133 |
aaaaacctgcatttgcatatcgatcagcacat |
164 |
Q |
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| T |
39694963 |
aagaacctgcatttgcatatagatcagcacat |
39694932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 152
Target Start/End: Complemental strand, 39703975 - 39703856
Alignment:
| Q |
33 |
gaaatcttccacttgttgaattgtgcatagtctccatgatgatttcttaattgtgccatttgagtgtaggtctgcatcagttattagagcggcacggttg |
132 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||| ||| | |||||||||||||||||| |||| || || ||| |
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| T |
39703975 |
gaaatcttccacttgttgaactgtgcatagtttccatgatgatttcttaattgagccatctgattttaggtctgcatcagttatcagagttgcgcgattg |
39703876 |
T |
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| Q |
133 |
aaaaacctgcatttgcatat |
152 |
Q |
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| T |
39703875 |
aagaacctgcatttgcatat |
39703856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 38062049 - 38062191
Alignment:
| Q |
1 |
gtccataatggtaatattccaactannnnnnngaaatcttccacttgttgaattgtgcatagtctccatgatgatttcttaattgtgccatttgagtgta |
100 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||| ||||| || |
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| T |
38062049 |
gtccatagtggtaatattccaattatttttttgaaatcttccacttgttgaactgtgcatagtctccatgatgaattcttaactgagccatctgagttta |
38062148 |
T |
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| Q |
101 |
ggtctgcatcagttattagagcggcacggttgaaaaacctgca |
143 |
Q |
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|||||||||||||||||| ||| ||||| ||||| |||||||| |
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| T |
38062149 |
ggtctgcatcagttattaaagctgcacgattgaagaacctgca |
38062191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 38180844 - 38180932
Alignment:
| Q |
64 |
ctccatgatgatttcttaattgtgccatttgagtgtaggtctgcatcagttattagagcggcacggttgaaaaacctgcatttgcatat |
152 |
Q |
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||||||||||| ||||||| | ||||| ||||| ||||||||||||| ||||||||| ||||| ||||| ||| | ||||||||||| |
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| T |
38180844 |
ctccatgatgacttcttaacttagccatctgagtttaggtctgcatcaattattagagttgcacgattgaataactttcatttgcatat |
38180932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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