View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20876_low_1 (Length: 727)
Name: NF20876_low_1
Description: NF20876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20876_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 302
Target Start/End: Complemental strand, 48569421 - 48569141
Alignment:
| Q |
21 |
aattcataatcaattttcacacagaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttc-agaagatgtcaa |
119 |
Q |
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| T |
48569421 |
aattcataatcaattttcaca--gaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttccagaagatgtcaa |
48569324 |
T |
|
| Q |
120 |
ccttccaagagtagaccaaagtaccataattttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48569323 |
ccttccaagagtagaccaaagtaccataattttctatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc |
48569224 |
T |
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| Q |
220 |
attggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
302 |
Q |
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| T |
48569223 |
attggagcatttccaaccaaaaaggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
48569141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 516 - 709
Target Start/End: Complemental strand, 48568909 - 48568716
Alignment:
| Q |
516 |
cgcagcaattatgtcaagacaagttcagttctttaaaaaactaacagggattaaggaaatggcctaattaatttgtctagcaaaattgactgaaataata |
615 |
Q |
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| T |
48568909 |
cgcagcaattatgtcaagacaagttcagttctttaaaaaactaacagggattaaggaaatggcctaattaatttgtctagcaaaattgactgaaataata |
48568810 |
T |
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| Q |
616 |
ttagcgttgactattatctaggagacaagatgaggaatggccttccgcctgctcttgcataagtgtatttccaagttagaactgacacatgtat |
709 |
Q |
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| T |
48568809 |
ttagcgttgactattatctaggagacaagatgaggaatggccttccgcctgctcttgcataagtgtatttccaagttaaaactgacacatgtat |
48568716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 361 - 513
Target Start/End: Complemental strand, 48569090 - 48568936
Alignment:
| Q |
361 |
ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctc |
460 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48569090 |
ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctc |
48568991 |
T |
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| Q |
461 |
catagagaagaaggtagagtcttctgtc--gagctctttgcagtgacctaaagaa |
513 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48568990 |
catagagaagaaggtagagtcttctgtcaagagctctttgcagtgacctaaagaa |
48568936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 110 - 296
Target Start/End: Original strand, 10821749 - 10821937
Alignment:
| Q |
110 |
aagatgtcaaccttccaagagtagaccaaagtaccataa--ttttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaaca |
207 |
Q |
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|||||||||||||||||| |||||| |||||||| || ||| | | || ||||||||||||||| ||||||| || ||||| |||||||||||| |
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| T |
10821749 |
aagatgtcaaccttccaatagtagattgaagtaccacaaaatttcctttaaacataccttaaaagatgttgatcctgtctgctcttctttaggctgaaca |
10821848 |
T |
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| Q |
208 |
accatatgggccattggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa |
296 |
Q |
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||| |||||||||| ||||||||||| |||||||| ||||| || |||||||||| |||||||||||| ||||| || ||||||||||| |
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| T |
10821849 |
accgtatgggccatcggagcatttccgacaaaatatgtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa |
10821937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 161 - 296
Target Start/End: Complemental strand, 36145584 - 36145449
Alignment:
| Q |
161 |
ataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcc |
260 |
Q |
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||||||||||||||| ||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| || |||||||| |
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| T |
36145584 |
ataccttaaaagatgttgatcctgtctgctcttctttaggctgaacaacaatatgggccatcggagcatttccgacaaaatatgtatttgaaagatctcc |
36145485 |
T |
|
| Q |
261 |
tatgactgatttcaatgcagactcagcacactgcaa |
296 |
Q |
| |
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| T |
36145484 |
caagactgatttcaaggcagattctgcacactgcaa |
36145449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 368 - 511
Target Start/End: Original strand, 10822202 - 10822347
Alignment:
| Q |
368 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctccatagag |
467 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| || || || ||||||||||| | ||| ||| |||| |
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| T |
10822202 |
gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacaggctttccacttggagccccataagcatcaccaaagag |
10822301 |
T |
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| Q |
468 |
aagaaggtagagtcttctgtc--gagctctttgcagtgacctaaag |
511 |
Q |
| |
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||||||||| ||||||||||| |||| ||||| |||||||||||| |
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| T |
10822302 |
aagaaggtaaagtcttctgtcaagagccctttgtagtgacctaaag |
10822347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 368 - 512
Target Start/End: Complemental strand, 36145194 - 36145048
Alignment:
| Q |
368 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctccatagag |
467 |
Q |
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||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||| || || || ||||||||||| | ||| ||| |||| |
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| T |
36145194 |
gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacaggctttccacttggagccccataagcatcaccaaagag |
36145095 |
T |
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| Q |
468 |
aagaaggtagagtcttctgtc--gagctctttgcagtgacctaaaga |
512 |
Q |
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||||||||| |||||||| || |||| ||||| ||||||||||||| |
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| T |
36145094 |
aagaaggtaaagtcttctatcaagagccctttgtagtgacctaaaga |
36145048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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