View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20876_low_3 (Length: 394)
Name: NF20876_low_3
Description: NF20876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20876_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 48145625 - 48145990
Alignment:
| Q |
18 |
cattccattgtaagcaattggagcatacatccacatatcttcagagcttaaaagctgtttcatatccaaataaataaataaacaatgaattaatatttat |
117 |
Q |
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| T |
48145625 |
cattccattgtaagcaattggagcatacatccacatatcttcagagcttaaaagctgtttcatatccaaataaataaataaacaatgaattaatatttat |
48145724 |
T |
|
| Q |
118 |
cttttgcatataagaaattgaaaaatggaagtttctcaaattgttaccttaatttgaagctgcaaaaacttcacatattggacagcttcctcaagcatag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48145725 |
cttttgcatataagaaattgaaaaatggaagtttctcaaattgttaccttaatttgaagctgcaaaaacttcacatattggacagcttcctcaagcatag |
48145824 |
T |
|
| Q |
218 |
tgctaatatctacctacaattcacaaacaatgaaaaattgaaaatttgtacaccttaaccaattgttagtttaatttccattaattaattaagaaatcta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
48145825 |
tgctaatatctacctacaattcacaaacaatgaaaaattgaaaatttgtacaccttaaccaattgttagttcaatttccattaattgattaagaaatcta |
48145924 |
T |
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| Q |
318 |
ccttagttccatttgggacaagggtttgcaagattctcaatctttcatttattctttctcttctct |
383 |
Q |
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| T |
48145925 |
ccttagttccatttgggacaagggtttgcaagattctcaatctttcatttattctttctcttctct |
48145990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 48150485 - 48150845
Alignment:
| Q |
18 |
cattccattgtaagcaattggagcatacatccacatatcttcagagcttaaaagctgtttcatatccaaataaataaataaacaatgaattaatatttat |
117 |
Q |
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| T |
48150485 |
cattccattgtaagcaattggagcatacatccacat---------gctcaaaagctgtttcatatccaaataaataaataaacaatgaattaatatttat |
48150575 |
T |
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| Q |
118 |
cttttgcatataagaaattgaaaaatggaagtttctcaaattgttaccttaatttgaagctgcaaaaacttcacatattggacagcttcctcaagcatag |
217 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48150576 |
cttttgcatataagaaattgaaaattggaagtttctcaaatagttaccttaatttgaagctgcaaaaacttcacatattggacagcttcctcaagcatag |
48150675 |
T |
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| Q |
218 |
tgctaatatctacctacaattcacaaacaatgaaaaattgaaaatttgtacaccttaaccaattgtt-agtttaatttccat----taattaattaagaa |
312 |
Q |
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| T |
48150676 |
tgctaatatccacctacaattcacaaacaaaaaaagtttgagaatttgaccatcttaaccaattattgagtaatagttcaatattgtttgtcattaagaa |
48150775 |
T |
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| Q |
313 |
atctaccttagttccatttgggacaagggtttgcaagattctcaatctttcatttattctttctcttctc |
382 |
Q |
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| T |
48150776 |
agctaccttagttccatttgggacaagagtttgcaagattctcaatctttcatttattctttctcttctc |
48150845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 48140885 - 48140964
Alignment:
| Q |
161 |
ttaccttaatttgaagctgcaaaaacttcacatattggacagcttcctcaagcatagtgctaatatctacctacaattca |
240 |
Q |
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| T |
48140885 |
ttaccttaatttggacctgtaaaaacttcacatattgcacagcttcctcaagcatggtgctgatatccacctataattca |
48140964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 5272037 - 5272089
Alignment:
| Q |
21 |
tccattgtaagcaattggagcatacatccacatatcttcagagcttaaaagct |
73 |
Q |
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| T |
5272037 |
tccattgtaagcaagtggtgcatacatccacatatcatcagagctcaaaagct |
5272089 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 48141031 - 48141103
Alignment:
| Q |
309 |
agaaatctaccttagttccatttgggacaagggtttgcaagattctcaatctttcatttattctttctcttct |
381 |
Q |
| |
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||||| ||||||| |||||||| ||||| ||| |||| | |||| |||| ||||||||||||||||||||||| |
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| T |
48141031 |
agaaagctaccttggttccattagggaccaggctttgtaggattttcaacctttcatttattctttctcttct |
48141103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 48140669 - 48140727
Alignment:
| Q |
18 |
cattccattgtaagcaattggagcatacatccacatatcttcagagcttaaaagctgtt |
76 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||| | |||||||| |
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| T |
48140669 |
cattccattgtaagcaattggagcatacatccagtgatcatcagagctcagaagctgtt |
48140727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 279349 - 279280
Alignment:
| Q |
163 |
accttaatttgaagctgcaaaaacttcacatattggacagcttcctcaagcatagtgctaatatctacct |
232 |
Q |
| |
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|||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||| |
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| T |
279349 |
accttaatttgaagttgtaaaaatttcacatattggacagcttcctcaagcatggtgctgatatccacct |
279280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 279203 - 279138
Alignment:
| Q |
316 |
taccttagttccatttgggacaagggtttgcaagattctcaatctttcatttattctttctcttct |
381 |
Q |
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||||||||||||||| ||||||||| |||| | |||| |||| ||||||||||||||||||||||| |
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| T |
279203 |
taccttagttccattggggacaaggttttgtaggattttcaacctttcatttattctttctcttct |
279138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 279492 - 279434
Alignment:
| Q |
18 |
cattccattgtaagcaattggagcatacatccacatatcttcagagcttaaaagctgtt |
76 |
Q |
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|||||||||||||||||| |||| ||||||||| | || |||||||||| |||||||| |
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| T |
279492 |
cattccattgtaagcaatgggagagtacatccacgtgtcatcagagcttagaagctgtt |
279434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 47456937 - 47456885
Alignment:
| Q |
21 |
tccattgtaagcaattggagcatacatccacatatcttcagagcttaaaagct |
73 |
Q |
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|||||| ||||||||||||||||||||||||| ||| |||||||||| ||||| |
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| T |
47456937 |
tccattataagcaattggagcatacatccacagatcatcagagcttagaagct |
47456885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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