View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20876_low_4 (Length: 279)
Name: NF20876_low_4
Description: NF20876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20876_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 24751864 - 24751615
Alignment:
| Q |
15 |
atcatgcatgcattccctcatgccaaccaaaataaaaagaaaagaaacctttcaaatatatatattatacgcagcagcactatgaatagaaactatgtag |
114 |
Q |
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| T |
24751864 |
atcattcatgcgttccctcatgccaaccaaaataaaaagaaaagaaacctttcaaatatatatattatatgcagcagcaccatgaatagcaactatgtag |
24751765 |
T |
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| Q |
115 |
agaagctgtgtgactgaaaggataattatgaaagcttccatagttttctgcaaaaagaggaaatttcaagagttaaaaatatatagtcaccaagaaaatt |
214 |
Q |
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| T |
24751764 |
agaagctgtgtgactgaaaggataattatgaaagcttccatggttttctgcaaaaagaggaaatttcaagagttaaaaatatatagtcaccaagaaaatt |
24751665 |
T |
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| Q |
215 |
attaaatgattcttttcttgtcttaccagacgtgcatttctaatttgaag |
264 |
Q |
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| T |
24751664 |
attaaatgattcttttcttgtcttaccagacgtgcatttctaatttgaag |
24751615 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 21742953 - 21743038
Alignment:
| Q |
84 |
cgcagcagcactatgaatagaaactatgtagagaagctgtgtgactgaaaggataattatgaaagcttccatagttttctgcaaaa |
169 |
Q |
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| T |
21742953 |
cgcagcagcaccatgaatagcagctatgtagaaaagctgtgtagctgtaaggataatcagaaaagcctccatagttttctgcaaaa |
21743038 |
T |
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