View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20876_low_5 (Length: 266)

Name: NF20876_low_5
Description: NF20876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20876_low_5
NF20876_low_5
[»] chr2 (4 HSPs)
chr2 (1-258)||(39929097-39929354)
chr2 (38-258)||(39695146-39695366)
chr2 (38-258)||(39934749-39934969)
chr2 (38-258)||(39704058-39704278)
[»] chr8 (1 HSPs)
chr8 (30-171)||(38061862-38062006)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 39929354 - 39929097
Alignment:
Q  1 ctatcaattccaatagtaatgcaaatggacttcattatacttcaagctttagtcatggatcgttctttaggattccattttgaaatcccagctggttcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39929354 ctatcaattccaatagtaatgcaaatggacttcattatacttcaagctttagtcatggatcgttctttaggataccattttgaaatcccagctggttcta 39929255  T
Q  101 tttctgttatagtcttaatatcagcacccattttcctcacttttcttgacagggtgctattgccaagttggcataaggttactggaaaatctcctaagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  39929254 tttctgttatagtcttaatatcagcacccattttcctcacttttcttgacagggtgctattgccaagttggcataaggttaccagaaaatctcctaagct 39929155  T
Q  201 gctccaacaaataggagtaggacatgtgttcaatgttcttggcatggtggtctctgct 258  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39929154 gctccatcaaataggagtaggacatgtgttcaatgttcttggcatggtggtctctgct 39929097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 38 - 258
Target Start/End: Original strand, 39695146 - 39695366
Alignment:
Q  38 tacttcaagctttagtcatggatcgttctttaggattccattttgaaatcccagctggttctatttctgttatagtcttaatatcagcacccattttcct 137  Q
    |||||||||||||||||||||||||||| ||||||  ||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||    
T  39695146 tacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgttatagtcttgatatcagcacccattttcct 39695245  T
Q  138 cacttttcttgacagggtgctattgccaagttggcataaggtta-ctggaaaatctcctaagctgctccaacaaataggagtaggacatgtgttcaatgt 236  Q
    ||| ||||||||||| |||||||| ||| ||||||||||||||| | |||||||  |||| || |||||||| |||||||| |||||||||||| | |||    
T  39695246 cacatttcttgacagagtgctattaccaggttggcataaggttaccaggaaaat-gcctatgccgctccaacgaataggagcaggacatgtgttgactgt 39695344  T
Q  237 tcttggcatggtggtctctgct 258  Q
    |||||||||||| |||||||||    
T  39695345 tcttggcatggttgtctctgct 39695366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 258
Target Start/End: Complemental strand, 39934969 - 39934749
Alignment:
Q  38 tacttcaagctttagtcatggatcgttctttaggattccattttgaaatcccagctggttctatttctgttatagtcttaatatcagcacccattttcct 137  Q
    ||||||||||||||||||||||||| |||||||||  ||||||| ||||||||||| ||| | |||||||||| ||||||||||||||||||||||| ||    
T  39934969 tacttcaagctttagtcatggatcggtctttaggaccccattttaaaatcccagctagttttgtttctgttattgtcttaatatcagcacccatttttct 39934870  T
Q  138 cacttttcttgacagggtgctattgccaagttggcataaggttactggaaaatctcctaagctgctccaacaaataggagtaggacatgtgttcaatgtt 237  Q
    ||||||||||||||||||||| |||||| ||||||||||| |||| || ||||| | || || |||||| | |||||||| |||||||||||| | ||||    
T  39934869 cacttttcttgacagggtgctcttgccatgttggcataagattaccggcaaatcacttatgccgctccagcgaataggagcaggacatgtgttgactgtt 39934770  T
Q  238 cttggcatggtggtctctgct 258  Q
    ||||||||||| |||||||||    
T  39934769 cttggcatggttgtctctgct 39934749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 258
Target Start/End: Original strand, 39704058 - 39704278
Alignment:
Q  38 tacttcaagctttagtcatggatcgttctttaggattccattttgaaatcccagctggttctatttctgttatagtcttaatatcagcacccattttcct 137  Q
    ||||||||||||||| ||||||||| || ||||||  ||||||  |||| |||||||||||| |||||||||||||| |||||||| || ||||||||||    
T  39704058 tacttcaagctttagccatggatcgctcattaggaccccatttcaaaattccagctggttctgtttctgttatagtcataatatcaacatccattttcct 39704157  T
Q  138 cacttttcttgacagggtgctattgccaagttggcataaggttactggaaaatctcctaagctgctccaacaaataggagtaggacatgtgttcaatgtt 237  Q
    ||| ||||||||||| |||||||||||| ||||||||||| ||||||||||| | |||| ||  || |||| ||||||||||||||||||||| | ||||    
T  39704158 cacctttcttgacagagtgctattgccatgttggcataagattactggaaaaacgcctatgccacttcaacgaataggagtaggacatgtgttgactgtt 39704257  T
Q  238 cttggcatggtggtctctgct 258  Q
    ||||||||||| |||||||||    
T  39704258 cttggcatggttgtctctgct 39704278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 38062006 - 38061862
Alignment:
Q  30 cttcattatacttcaagctttagtcatggatcgttctttaggattccattttgaaatcccagctggttctatttctg---ttatagtcttaatatcagca 126  Q
    ||||||| ||||||||| |||| |||||||||||||| ||||||  |||||| ||||||||||||||||| ||||||   ||||||| ||||||||| ||    
T  38062006 cttcattgtacttcaagatttaatcatggatcgttctgtaggatctcattttaaaatcccagctggttctgtttctgttattatagtgttaatatcaaca 38061907  T
Q  127 cccattttcctcacttttcttgacagggtgctattgccaagttgg 171  Q
     | ||||||||||| ||||||||||| ||| |||||||| |||||    
T  38061906 tctattttcctcacctttcttgacagagtgttattgccaggttgg 38061862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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