View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20877_high_13 (Length: 306)
Name: NF20877_high_13
Description: NF20877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20877_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 42326907 - 42327176
Alignment:
| Q |
19 |
cgtaagattcagagtaatggacggtatctttgaccttgtggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatcacaaccagaat |
118 |
Q |
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| T |
42326907 |
cgtaagattcagagtaatggacggtatctttgaccttgtggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatcacaaccagaat |
42327006 |
T |
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| Q |
119 |
caagcatacgcataacatgcacactttgcccggacaacacatctttaatcaacgatcgtcgaagaaaaagagtttcaatannnnnnnncctcttggtatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42327007 |
caagcatacgcataacatgcacactttgcccggacaacacatctttaatcaacgatcgtcgaagaaaaagagtttcaata-attttttcctcttggtatt |
42327105 |
T |
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| Q |
219 |
tctgatcttgtgaaaaaattgtgaagataatgtggtgaatttaaaagaaaatgaagaagttaacgttggtg |
289 |
Q |
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| T |
42327106 |
tctgatcttgtgaaaaaattgtgaagataatgtggtgaatttaaaagaaaatgaagaaggtaacgttggtg |
42327176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 42319517 - 42319674
Alignment:
| Q |
19 |
cgtaagattcagagtaatggacggtatctttgaccttgtggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatcacaaccagaat |
118 |
Q |
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||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||| |
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| T |
42319517 |
cgtaagaatcagagtaatgaacggtgtctttgactttgtggaaaccattcttgaatactccgaatccaaacagaattccgatcgtgatcacaaccacaat |
42319616 |
T |
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| Q |
119 |
caagcatacgcataacatgcacactttgcccggacaacacatctttaatcaacgatcg |
176 |
Q |
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|||||||| ||||||| |||| | |||||| ||||||||||||| ||| |||||||| |
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| T |
42319617 |
caagcatatgcataacgtgcagattttgcctggacaacacatctcgaatgaacgatcg |
42319674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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