View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20877_high_18 (Length: 228)
Name: NF20877_high_18
Description: NF20877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20877_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 17478876 - 17478662
Alignment:
| Q |
1 |
agctcttcatcaggtatatcttactttgtgggagtgcttatttttcttggtcattttgagattgcgttcataagaatattgtgttgatgccttctttaaa |
100 |
Q |
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| T |
17478876 |
agctcttcatcaggtatatcttactttgtgggagtgcttatttttcttggtcattttgagattgcgttcataagaatattgtgttgatgccttctttaaa |
17478777 |
T |
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| Q |
101 |
gtaatgttcatcactgggcttcgtcaatttcgtgtattggttcttggacttgcatgttgttgtggaattcatttctttgttttaacaatgatttgaggaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17478776 |
gtaacgttcatcactgggcttcgtcaatttcgtgtattggttcttggacttgcatgttgttgtggaattcatttatttgttttaacaatgatttgaggaa |
17478677 |
T |
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| Q |
201 |
cttgtggtggttttc |
215 |
Q |
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||||||||||||||| |
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| T |
17478676 |
cttgtggtggttttc |
17478662 |
T |
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