View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20877_low_1 (Length: 548)
Name: NF20877_low_1
Description: NF20877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20877_low_1 |
 | |
|
| [»] scaffold0454 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 12 - 531
Target Start/End: Complemental strand, 3749586 - 3749067
Alignment:
| Q |
12 |
atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3749586 |
atgaattgagcaatgctttgttgccgttgcgtgacttgcaagaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact |
3749487 |
T |
|
| Q |
112 |
agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3749486 |
agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcg |
3749387 |
T |
|
| Q |
212 |
ctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaaaaatctccatggcttttttc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3749386 |
ctttgtgaattgaccggtacatttccacatgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaaaaatctccatggcttttttc |
3749287 |
T |
|
| Q |
312 |
cacactactcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3749286 |
cacactactcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaaattatc |
3749187 |
T |
|
| Q |
412 |
tactttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtggtctaacagtttt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3749186 |
tactttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtggtctaacagtttt |
3749087 |
T |
|
| Q |
512 |
accggtccaatgccatcctt |
531 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3749086 |
accggtccaatgccatcctt |
3749067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 506
Target Start/End: Complemental strand, 5858698 - 5858204
Alignment:
| Q |
12 |
atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact |
111 |
Q |
| |
|
|||||| || ||||||||||||||||||||| || | || |||||||||||||||| ||||| | ||| ||| |||||||||||||||||||||| ||| |
|
|
| T |
5858698 |
atgaatggatcaatgctttgttgccgttgcgaaacctacaagaattgagcatgtcttcctgtggtctattaggtccccttgattcttccctaacaaaact |
5858599 |
T |
|
| Q |
112 |
agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||| ||||| || |||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
5858598 |
agagaacctatcagtcattattcttgatgagaactatttttcatccccagttcctgaaacatttgcaaattttaaaaacttgactaccctcagtcttgca |
5858499 |
T |
|
| Q |
212 |
ctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaaaaatctccatggcttttttc |
311 |
Q |
| |
|
|||||| ||| ||||||||||||||| |||||||||||||||||| |||| |||||||| ||| |||| ||||||||| ||| | |||| |
|
|
| T |
5858498 |
ttttgtgcattatccggtacatttccacagaagatctttcagattggaacattgtctgtgattgacttattttccaacgaaaatctccgtggttcatttc |
5858399 |
T |
|
| Q |
312 |
cacactactcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatc |
411 |
Q |
| |
|
|| |||||||| | |||||||||||||| | ||||||||| ||| |||||||||||| |||| ||||||||| | |||||| ||| |||| ||||||| |
|
|
| T |
5858398 |
caaactactcactaagtgaatctcttcatagaattagagtgagtgacacaaacttctctggaccattacctagctctattggcaacttgaggcagttatc |
5858299 |
T |
|
| Q |
412 |
tactttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtggtctaaca |
506 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||| |
|
|
| T |
5858298 |
tgaattggatctttctttttgtcaatttaatggaacccttccaaattcattgtcaaacctcacacacctcagttacttggatctgtcatctaaca |
5858204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 28 - 490
Target Start/End: Complemental strand, 5565418 - 5564956
Alignment:
| Q |
28 |
tttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactagagaacctatcagtc |
127 |
Q |
| |
|
|||||||||||| |||||| | || ||||| ||||||| ||||| | | ||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
5565418 |
tttgttgccgttccgtgacctacaagaattaggcatgtcaagctgtggtctttcaggaccccttgattcttccctttcaaaactagagaacctatcagtc |
5565319 |
T |
|
| Q |
128 |
attattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgctttgtgaattgaccg |
227 |
Q |
| |
|
|||||||||| || || ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
5565318 |
attattcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccg |
5565219 |
T |
|
| Q |
228 |
gtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaaaaatctccatggcttttttccacactactcaatgag |
327 |
Q |
| |
|
|||||||||||| || |||||||||| |||| |||| ||||||||| | ||| | ||||||||||| | || ||| |||||||| | || |
|
|
| T |
5565218 |
gtacatttccacaaaatatttttcagattgaaacattgtctgttattgacttatcatttaactacaatctccatggttcattcccagactactcactaag |
5565119 |
T |
|
| Q |
328 |
tgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttggatctttct |
427 |
Q |
| |
|
|||||||||||| | |||| ||| ||| |||||||||||| |||||||||||||| | |||||| || |||| | ||||||| ||||||||||| |
|
|
| T |
5565118 |
tgaatctcttcatagcattatagtgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttcc |
5565019 |
T |
|
| Q |
428 |
ttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttg |
490 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
5565018 |
agttgtcaatttaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttg |
5564956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 477
Target Start/End: Original strand, 5885920 - 5886385
Alignment:
| Q |
12 |
atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact |
111 |
Q |
| |
|
|||||| ||| ||||||||||| ||| ||||||||||||| || |||||||||| | ||||| | ||||||||||||||||||| ||||| ||| ||| |
|
|
| T |
5885920 |
atgaatggagtaatgctttgttaccgctgcgtgacttgcaagagttgagcatgtataactgtagtctatcaggaccccttgattcctccctttcaaaact |
5886019 |
T |
|
| Q |
112 |
agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcg |
211 |
Q |
| |
|
|||||||||||| ||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
5886020 |
agagaacctatcggtcattattcttggcgagaacaatttttcatccccagtgccacaaacatttgccaattttaaaaacctaaccaccctcaatcttcaa |
5886119 |
T |
|
| Q |
212 |
ctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaaaaatctccatggcttttttc |
311 |
Q |
| |
|
||| | |||||| | ||||||||||| ||||| || ||| |||||||||||| ||||||||| | | ||||| |||||||||| ||||| | |
|
|
| T |
5886120 |
aattgcggattgacagatacatttccacaaaagatcttccaaattagaacactgtcaattattgacttatctgacaaccccaatctccatgtttttttcc |
5886219 |
T |
|
| Q |
312 |
cacactactcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatc |
411 |
Q |
| |
|
| | |||||| | ||||||| |||||| | |||||||| |||||||||| ||||| ||||||||| || |||| ||| || ||| ||| ||| ||| | |
|
|
| T |
5886220 |
ctgattactcacttagtgaatatcttcatagcattagagtgagtaacacaagcttctctggagcatttccaaacaatatcggtaacatgacaaactta-c |
5886318 |
T |
|
| Q |
412 |
tact-ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacaca |
477 |
Q |
| |
|
| || |||||| ||||||| |||||| | ||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
5886319 |
tcctattggatatttctttctgtcaactatatggaacacttcccaattcactgtcaaatctcacaca |
5886385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 28 - 480
Target Start/End: Complemental strand, 5605736 - 5605283
Alignment:
| Q |
28 |
tttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactagagaacctatcagtc |
127 |
Q |
| |
|
|||||||||| | |||||| | || ||||| | ||||| |||||| ||| |||||||||||||||||||||||| |||| |||||||| |||| ||| |
|
|
| T |
5605736 |
tttgttgccgctccgtgacctacaagaattaggtatgtcagactgtggtttttcaggaccccttgattcttccctagcaaggttagagaacttatctgtc |
5605637 |
T |
|
| Q |
128 |
attattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgctttgtgaattgaccg |
227 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||| |||| ||||| |||||| | |
|
|
| T |
5605636 |
attcttcttgatgggaacaatttttcatccccagtgccagaaacatttgccaattttaaaaacctaaccaccctcaatcttaacgattgtggattgactg |
5605537 |
T |
|
| Q |
228 |
gtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaaaaatctccatgg-cttttttccacactactcaatga |
326 |
Q |
| |
|
| |||||||||| || ||||| ||| ||||||||||| ||||||||| | | ||||| || || ||||| ||||||||| |||||||| | | |
|
|
| T |
5605536 |
gaacatttccacaaaatatatttcaaattagaacactgtcagatattgacttatctgacaaccctaaccttcatggttttttttccagactactcactta |
5605437 |
T |
|
| Q |
327 |
gtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttggatctttc |
426 |
Q |
| |
|
||||||||||||| | |||| | |||||||||| ||||| |||||||||||||| | |||||| ||| |||| | |||||| ||| ||||||| |
|
|
| T |
5605436 |
gtgaatctcttcacagcattatggcgagtaacacaagcttctctggagcattacctagctctattggcaacttgaggcacttatctgaattgtatctttc |
5605337 |
T |
|
| Q |
427 |
tttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaact |
480 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
5605336 |
cagttgtcaatttaatggaacactttccaattcattgtcaaacctcacacaact |
5605283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 5582905 - 5583129
Alignment:
| Q |
14 |
gaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactag |
113 |
Q |
| |
|
|||| ||| |||||||||||||| ||| | || | || | |||||| |||||||| |||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5582905 |
gaatggaggaatgctttgttgcccctgcctaacctccaagtattgagtatgtcttattgtgatctatcaggtccccttgattcttccctaacaagactaa |
5583004 |
T |
|
| Q |
114 |
agaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||||| || ||||||||||||||||| |
|
|
| T |
5583005 |
agaacctatcagtcattattcttgatgggaacaatttttcatccccagtgccacaaacattttccaatttcaaaaaattaaccaccctcagtcttgcatc |
5583104 |
T |
|
| Q |
214 |
ttgtgaattgaccggtacatttcca |
238 |
Q |
| |
|
||||| |||||| |||| ||||||| |
|
|
| T |
5583105 |
ttgtggattgactggtaaatttcca |
5583129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 5847705 - 5847901
Alignment:
| Q |
12 |
atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact |
111 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| |||| | |||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5847705 |
atgaatggagcaatgctttgttgcctttgcgtgacctgcaaaagttgagcatgtctgattgtgatctatcaggaccccttgattcttccctaacaagact |
5847804 |
T |
|
| Q |
112 |
agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtctt |
208 |
Q |
| |
|
||||||||| | |||||| |||||| || |||||| |||||||| |||||||| ||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
5847805 |
agagaacctgacggtcattgttcttggtgagaacaacttttcatccccagtgccacaaacatttgccaattttaaaaacctaaccaccctcaatctt |
5847901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 5894772 - 5895233
Alignment:
| Q |
19 |
gagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactagagaac |
118 |
Q |
| |
|
||||||||||||| | || ||||||||| | || ||||||||||||||| | |||||||| |||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
5894772 |
gagcaatgctttgatacctttgcgtgacctacaagaattgagcatgtctaattgtgatttgtcaggatcccttgattcttccctatcaagactacagaac |
5894871 |
T |
|
| Q |
119 |
ctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgctttgtg |
218 |
Q |
| |
|
|| ||||||||||||||| || | |||||||||||||| || |||| ||||||||||||||||||||||| | |||||||||| |||| |||| |
|
|
| T |
5894872 |
ctgtcagtcattattctttatcgaaacaatttttcatcctcattgccagaaacatttgccaattttaaaaacctaaccaccctcaatcttcgaaagtgtg |
5894971 |
T |
|
| Q |
219 |
aattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaaaaatctccatggcttttttccacacta |
318 |
Q |
| |
|
||||| |||||||||||||| ||||| || ||| | ||||||||| ||||||||| | | |||| |||||||| | ||||||||| |||| |
|
|
| T |
5894972 |
gattgatcggtacatttccacaaaagatcttccaaattaggacactgtcagttattgacttatctggcaaccccaatctccaagttttttttccagacta |
5895071 |
T |
|
| Q |
319 |
ctcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttg |
418 |
Q |
| |
|
|||| | |||||||||||||| | |||| | | ||||||||| ||||| |||| || | || ||| || || ||| ||| ||| |||| ||| |
|
|
| T |
5895072 |
ctcacttagtgaatctcttcatagcattatattgcgtaacacaagcttctctggaccacttccacacaacatcggtaacatgacaaacttattggaattg |
5895171 |
T |
|
| Q |
419 |
gatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaact |
480 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
5895172 |
gatctttcttactgtcaactatatggaacacttcccaattcactgtcaaacctcacacaact |
5895233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 5570708 - 5570952
Alignment:
| Q |
24 |
atgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactagagaacctatc |
123 |
Q |
| |
|
|||||||||| ||| ||||| || | || | |||||| |||||||| |||||| |||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
5570708 |
atgctttgtttccgctgcgtaacctccaagtattgagtatgtcttattgtgatctatcaggacccctttcttcttccctaacaagactaaagaacctatc |
5570807 |
T |
|
| Q |
124 |
agtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgctttgtgaattg |
223 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| | |||||| |||||||| ||||||||||||| | ||||||||||||||| | ||||| |||| |
|
|
| T |
5570808 |
agtcattattcttgatgggaactatttctcatccctagtgccagaaacattttccaattttaaaaaactaaccaccctcagtctttcatcttgtggattg |
5570907 |
T |
|
| Q |
224 |
accggtacatttccacgtgcaatctttcagattggaacactgtca |
268 |
Q |
| |
|
|| ||||||||||||| |||||||| ||||||||| ||||| |
|
|
| T |
5570908 |
acaggtacatttccacaaaatatctttcaaattggaacattgtca |
5570952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 5553842 - 5553616
Alignment:
| Q |
13 |
tgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagacta |
112 |
Q |
| |
|
||||| ||||||||||||||||||| || |||| | || || |||||||||| | |||||||| || |||| || || |||||||||||| ||| |||| |
|
|
| T |
5553842 |
tgaatggagcaatgctttgttgccgctgtgtgaactacaagagttgagcatgtataactgtgatctagcagggccactagattcttccctatcaaaacta |
5553743 |
T |
|
| Q |
113 |
gagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgc |
212 |
Q |
| |
|
| |||||||| ||||||||||||||| ||||||||||||| || || || || ||||||||||||||||| ||||| |||||||||| |||||| | |
|
|
| T |
5553742 |
aaaaacctatcggtcattattcttgataggaacaatttttcttcccccgttccagaaacatttgccaattttcaaaacctgaccacccttagtcttacat |
5553643 |
T |
|
| Q |
213 |
tttgtgaattgaccggtacatttccac |
239 |
Q |
| |
|
||||| ||| || ||||||||||||| |
|
|
| T |
5553642 |
cttgtggattaacaggtacatttccac |
5553616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 5852581 - 5852834
Alignment:
| Q |
14 |
gaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactag |
113 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| | || |||||| ||| | | |||||| || |||| || ||||||||||||||| ||| |||| |
|
|
| T |
5852581 |
gaatggagcaatgctttgttgccactgcgtgaactacaaatgttgagcttgtataaatgtgatctagcagggccacttgattcttccctatcaaaactaa |
5852680 |
T |
|
| Q |
114 |
agaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgct |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| || || || || |||||||||| |||||| ||||| |||||||||| |||||| | |
|
|
| T |
5852681 |
ggaacctatcagtcattattcttgataggaacaatttttcttcccccgttccagaaacatttgctaattttcaaaacctgaccacccttagtctttcaga |
5852780 |
T |
|
| Q |
214 |
ttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtc |
267 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5852781 |
ttgtggattgactggtacatttccacagaagatctttcagattggaacactgtc |
5852834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 5559643 - 5559376
Alignment:
| Q |
12 |
atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | | ||| ||| ||||||| |||| ||||| |||||||||||||||| || || ||||||| |
|
|
| T |
5559643 |
atgaatggagcaatgctttgttgccgttgcgtggtctagaagaactgaccatgtctaactgcaatttaacaggaccccttgattcatctctgtcaagact |
5559544 |
T |
|
| Q |
112 |
agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcg |
211 |
Q |
| |
|
| |||| |||| |||||||||||||||| ||||||||||| || || ||||| |||||||| ||||||| | ||| ||||| ||||| |||||||| |
|
|
| T |
5559543 |
aaagaatttatcgatcattattcttgatggaaacaatttttcttccccggtgcctgaaacattttccaatttcagaaatttgacaacccttagtcttgca |
5559444 |
T |
|
| Q |
212 |
ctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgactt |
279 |
Q |
| |
|
|||| |||||| | ||||||||||| | ||||| || ||||||||| ||||| ||||||||| |
|
|
| T |
5559443 |
gcttgtagattgactgatacatttccacataagatcttccaaattggaacattgtcatttattgactt |
5559376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 5538833 - 5539030
Alignment:
| Q |
12 |
atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||| | || | | ||| ||| ||||||| ||||| ||||| ||||||| ||||| || || || ||||||| |
|
|
| T |
5538833 |
atgaatggagcaatgctttgttgccgttacatggtctagaagaactgaccatgtctaactgtaatttaacaggacctcttgaatcatctctgtcaagact |
5538932 |
T |
|
| Q |
112 |
agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttg |
209 |
Q |
| |
|
|||||| ||||| |||||||||| ||||| ||||||||||| || |||||||| |||||||| ||||||| | ||| ||||| ||||| ||||||| |
|
|
| T |
5538933 |
agagaatctatcgatcattattctcgatggaaacaatttttcttccccagtgcctgaaacattttccaatttcagaaatttgactacccttagtcttg |
5539030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 5613740 - 5613627
Alignment:
| Q |
12 |
atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact |
111 |
Q |
| |
|
|||||| || ||||||||||||||| ||| | ||| | || ||| ||||||||||| ||||| || |||||||||| |||||||||||||| ||| ||| |
|
|
| T |
5613740 |
atgaatggatcaatgctttgttgcctttgagcgacctacaagaactgagcatgtctaactgtaatctatcaggacctcttgattcttccctttcaaaact |
5613641 |
T |
|
| Q |
112 |
agagaacctatcag |
125 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5613640 |
agagaacctatcag |
5613627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 416 - 528
Target Start/End: Original strand, 5852983 - 5853095
Alignment:
| Q |
416 |
ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtggtctaacagttttaccg |
515 |
Q |
| |
|
|||||||||||| || |||||| |||||||||||||| |||||||| |||||||| ||| |||| ||||||||| || ||| | ||||||||| || | |
|
|
| T |
5852983 |
ttggatctttctaattctcaatttaatggaacacttcccaattcattttcaaacctaacagaactaagttacttggatttgtcatttaacagtttcacag |
5853082 |
T |
|
| Q |
516 |
gtccaatgccatc |
528 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
5853083 |
gtccgataccatc |
5853095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 528
Target Start/End: Complemental strand, 5553441 - 5553329
Alignment:
| Q |
416 |
ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtggtctaacagttttaccg |
515 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||| |||||||| |||||||| ||| |||| ||||||||| || ||| | ||||||||| || | |
|
|
| T |
5553441 |
ttggatctttctaattctcaatataatggaacacttcccaattcattttcaaacctaacagaactaagttacttggatttgtcatttaacagtttcacag |
5553342 |
T |
|
| Q |
516 |
gtccaatgccatc |
528 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
5553341 |
gtccgataccatc |
5553329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 252329 - 252378
Alignment:
| Q |
431 |
tgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaact |
480 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
252329 |
tgtcaatttaatggtacacttcccaattcattgtcaaacctcacaaaact |
252378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 251993 - 252057
Alignment:
| Q |
12 |
atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgat |
76 |
Q |
| |
|
|||||| | ||||||||||||||||| || |||| |||| || |||||||||||| |||||||| |
|
|
| T |
251993 |
atgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtctaactgtgat |
252057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 1485888 - 1485703
Alignment:
| Q |
12 |
atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact |
111 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||||||| |||| | ||||||||| | ||| | ||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
1485888 |
atgaatggagcaatgccttgttgccgctgcgtgagctgcaagtgttgagcatgagcaattgtagtctatcaggacccgttgattcctccctttcaaaact |
1485789 |
T |
|
| Q |
112 |
agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgacca |
197 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||||| ||||||| ||| | || |||||||| |||||||||||||| |||||| |
|
|
| T |
1485788 |
agagaacctaaccatcattattcttgataagaacaatctttcatcgccaattccagaaacatttaccaattttaaaaacctgacca |
1485703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 477
Target Start/End: Complemental strand, 1483456 - 1483224
Alignment:
| Q |
245 |
atctttcagattggaacactgtcaactattgacttgtttaacaacaaaaatctccatggcttttttccacactactcaatgagtgaatctcttcaaataa |
344 |
Q |
| |
|
||||||||||||| | |||||||| ||| ||||| | | ||||||| |||| ||||| | |||||| |||||||| | ||||||||||||| | || |
|
|
| T |
1483456 |
atctttcagattgcagcactgtcatttatcgacttatattacaacaacgatcttcatggttcatttccaaactactcacttagtgaatctcttcgtagaa |
1483357 |
T |
|
| Q |
345 |
ttagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttggatctttctttttgtcaattcaatgg |
444 |
Q |
| |
|
||||||| ||| |||||| || | |||| |||||| ||| |||||| || |||| | |||||| ||||||||| ||| |||||||| ||||| |
|
|
| T |
1483356 |
ttagagttagttacacaagtttatcaggagaattaccaaactctattggcaaattgaggtacttatctgaattggatcttccttactgtcaatttaatgg |
1483257 |
T |
|
| Q |
445 |
aacacttccaaattcattgtcaaacctcacaca |
477 |
Q |
| |
|
||||||||| |||||| |||| ||||||||||| |
|
|
| T |
1483256 |
aacacttcccaattcaatgtccaacctcacaca |
1483224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0454
Description:
Target: scaffold0454; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 1070 - 884
Alignment:
| Q |
12 |
atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact |
111 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||||||| |||| | ||||||||| | ||| | ||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
1070 |
atgaatggagcaatgccttgttgccgctgcgtgagctgcaagtgttgagcatgagcaattgtagtctatcaggacccgttgattcctccctttcaaaact |
971 |
T |
|
| Q |
112 |
agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgcc-aattttaaaaacttgacca |
197 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||||| ||||||| ||| | || |||||||| || |||||||||||| |||||| |
|
|
| T |
970 |
agagaacctaaccatcattattcttgataagaacaatctttcatcgccaattccagaaacatttacctaattttaaaaacctgacca |
884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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