View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20877_low_10 (Length: 321)
Name: NF20877_low_10
Description: NF20877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20877_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 4364918 - 4364616
Alignment:
| Q |
6 |
gtcgaagaatatggtccaatgaagtataattgggaagcttatgctgagcttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
105 |
Q |
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| T |
4364918 |
gtcgaaaaagatggtccaatgaagtataattgggaagcttatgctgaacttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
4364819 |
T |
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| Q |
106 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatgcaaatatctatcactcttgttaaacaaaatattcaactagacc--nnnnnnnnnnnnt |
203 |
Q |
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| T |
4364818 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatggaaatatctatcactcttgttaaacaaaatattcaactagaccaaaaataaaaaaaat |
4364719 |
T |
|
| Q |
204 |
caaagactaattttgttt-tattgcatctctttagcattcctctaccaccatgggtgctagaagaaataaggaagaaccctgagctagtttacacagaca |
302 |
Q |
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||||||||||||| |||| |||||||| | | |||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |
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| T |
4364718 |
caaagactaatttggtttgtattgcat-tttatagcattcctctaccaccatgggtgctagaagaaatcaggaagaaccctgagttggtttacacagaca |
4364620 |
T |
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| Q |
303 |
aatt |
306 |
Q |
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|||| |
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| T |
4364619 |
aatt |
4364616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 4372511 - 4372208
Alignment:
| Q |
6 |
gtcgaagaatatggtccaatgaagtataattgggaagcttatgctgagcttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
105 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372511 |
gtcgaaaaagatggtccaatgaagtataattgggaagcttatgctgaacttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
4372412 |
T |
|
| Q |
106 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatgcaaatatctatcactcttgttaaacaaaatattcaactagacc---nnnnnnnnnnnn |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372411 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatggaaatatctatcactcttgttaaacaaaatattcaactagaccaaaaataaaaaaaaa |
4372312 |
T |
|
| Q |
203 |
tcaaagactaattttgttt-tattgcatctctttagcattcctctaccaccatgggtgctagaagaaataaggaagaaccctgagctagtttacacagac |
301 |
Q |
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|||||||||||||| |||| |||||||| | | |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| |
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| T |
4372311 |
tcaaagactaatttggtttgtattgcat-tttatagcattcctctaccaccatgggtgctagaagaaatcaggaagaaccctgagttggtttacacagac |
4372213 |
T |
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| Q |
302 |
aaatt |
306 |
Q |
| |
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||||| |
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| T |
4372212 |
aaatt |
4372208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 41042653 - 41042773
Alignment:
| Q |
27 |
aagtataattgggaagcttatgctgagcttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtcttttcatcaatgtggtggaaatg |
126 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |
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| T |
41042653 |
aagtataactgggaagcttatgctgagcttgtgcagatggtgcaattgcatggtttgaagcttcaagttgttatgtcttttcatcagtgtggaggaaatg |
41042752 |
T |
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| Q |
127 |
ttggtgactcttgcaggtatg |
147 |
Q |
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|||| || || |||||||||| |
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| T |
41042753 |
ttggagattcctgcaggtatg |
41042773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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