View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20877_low_17 (Length: 242)
Name: NF20877_low_17
Description: NF20877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20877_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 9938257 - 9938471
Alignment:
| Q |
11 |
ttatactcaaactgaatcagatatagacctcataggtt-cgatatctgctggagcgagtgttgtgttatgtaaaagtgtattctcattattgaatcatgg |
109 |
Q |
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| T |
9938257 |
ttatactcagactgaatcagatatggacctcataggtttcgatatctgctggagcgagtgttgtgttatgtaaaagtgtattctcattattgaattatgg |
9938356 |
T |
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| Q |
110 |
tttgatacaaaggtcctatatatagcaaactgagatacacaacaaactgagttacttgagagctaagtaacttccacaactaacttctaactaacttgta |
209 |
Q |
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| T |
9938357 |
tttgatacaaagctcctatatatagcaaactgag-tacacaacaaactgagttacttgagagctaagtaacttccacaactaacttctaactaacttgta |
9938455 |
T |
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| Q |
210 |
acaagcatatcctaac |
225 |
Q |
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| T |
9938456 |
acaagcatatcctaac |
9938471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 30288366 - 30288244
Alignment:
| Q |
73 |
tgttatgtaaaagtgtattctcattattgaatcatggtttgatacaaaggtcctatatatagcaaactgagatacacaacaaa-ctgagttacttgagag |
171 |
Q |
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||||| |||||| | ||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||| ||||| |||||||||||| || |
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| T |
30288366 |
tgttaggtaaaaatttattctcattattgaat-atggtttggtacaagactgctatatatagcaaactgagatacactacaaaactgagttacttgcaag |
30288268 |
T |
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| Q |
172 |
ctaagtaacttccacaactaactt |
195 |
Q |
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| T |
30288267 |
ctaagtaacttctaaaactaactt |
30288244 |
T |
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