View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20877_low_2 (Length: 483)
Name: NF20877_low_2
Description: NF20877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20877_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 464
Target Start/End: Original strand, 8822065 - 8822513
Alignment:
| Q |
16 |
atcacttaacccaatccaatggcttcttcattcacgttctccgtcgtaaccgtttttctcgccaccgtcattctcaccgtacacggttgttctccttcag |
115 |
Q |
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| T |
8822065 |
atcacttaacccaatccaatggcttcttcattcacgttctccgtcgtaaccgtttttctcgccaccgtcattctcaccgtacacggttgttctccgtcag |
8822164 |
T |
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| Q |
116 |
acagaaccgcactcttatccttcaaagcatccctcaaagaaccctaccacggcatcttcaatacatggtccggcgaaaactgctgcgtaaactggtacgg |
215 |
Q |
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| T |
8822165 |
acagaaccgcactcttatccttcaaagcatccctcaaagaaccctaccacggcatcttcaatacatggtccggcgaaaactgctgcgtaaactggtacgg |
8822264 |
T |
|
| Q |
216 |
cgttagttgcgactccaccaccggccgtgtcaccgacatcaacctccgtggcgagtcagaagatccaatcatctcaaaatccggcaagtccggttacatg |
315 |
Q |
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| T |
8822265 |
cgttagttgcgactccaccaccggccgtgtcaccgacatcaacctccgtggcgagtcagaagatccaatcatctcaaaatccggcaagtctggttacatg |
8822364 |
T |
|
| Q |
316 |
actggaaaaatctcaccggagatttgcaaaattgacagcctcacttccttcatactcgccgattggaaagctatctccggtgagattccacaatgtctca |
415 |
Q |
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| T |
8822365 |
accggaaaaatctcaccggagatttgcaaaattgacagcctcacttccttcatactcgccgattggaaagctatctccggtgagattccacaatgtctca |
8822464 |
T |
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| Q |
416 |
cttctctctccaatctccgcattttggatcttatcggaaaccagctcac |
464 |
Q |
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| T |
8822465 |
cttctctctccaatctccgcattttggatcttatcggaaaccagctcac |
8822513 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 41998768 - 41998722
Alignment:
| Q |
239 |
gccgtgtcaccgacatcaacctccgtggcgagtcagaagatccaatc |
285 |
Q |
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| T |
41998768 |
gccgcgtcgccgatatcaacctccgcggcgagtcagaagatccaatc |
41998722 |
T |
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