View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20877_low_20 (Length: 225)
Name: NF20877_low_20
Description: NF20877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20877_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 49771113 - 49771292
Alignment:
| Q |
18 |
gttcataatgaaactcccagttttctataagcaaagggaccttcttcttttccctgcttgggcatattctttgcctacttggatccttaagattcctata |
117 |
Q |
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| T |
49771113 |
gttcataatgaaactcccagttttctataagcaaagggaccttctgcttttccctgcttgggcatattctttgcctacttggatccttaagattcctata |
49771212 |
T |
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| Q |
118 |
acctttgtagaagttggtatttgggttgtgttgacttactatgtaatcggatttgatccatgttttcaaaggtgggaata |
197 |
Q |
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| T |
49771213 |
acctttgtagaagttggtatttgggttgtgttgacttactatgtaatcggatttgatccatgttttgaaaggtgggaata |
49771292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 2885133 - 2885227
Alignment:
| Q |
39 |
tttctataagcaaagggaccttcttcttttccctgcttgggcatattctttgcctacttggatccttaagattcctataacctttgtagaagttg |
133 |
Q |
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|||||| |||||||| |||||||| |||| ||| | ||||||||| || | ||||| |||||||| ||||||||||| |||||| | ||||||| |
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| T |
2885133 |
tttctacaagcaaagagaccttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcctattacctttctggaagttg |
2885227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 2899398 - 2899293
Alignment:
| Q |
39 |
tttctataagcaaagggaccttcttcttttccctgcttgggcatattctttgcctacttggatccttaagattcctataacctttgtagaagttggtatt |
138 |
Q |
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|||||| |||||||| |||||||| |||| ||| | ||||||||| || | ||||| |||||||| ||||||||||| || ||| | ||||||| | || |
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| T |
2899398 |
tttctacaagcaaagagaccttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcctattacatttctggaagttgctgtt |
2899299 |
T |
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| Q |
139 |
tgggtt |
144 |
Q |
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|||||| |
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| T |
2899298 |
tgggtt |
2899293 |
T |
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