View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20877_low_5 (Length: 409)

Name: NF20877_low_5
Description: NF20877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20877_low_5
NF20877_low_5
[»] chr6 (1 HSPs)
chr6 (19-409)||(13328105-13328492)
[»] chr4 (8 HSPs)
chr4 (17-303)||(37919671-37919953)
chr4 (17-121)||(33832004-33832108)
chr4 (34-116)||(37074181-37074263)
chr4 (31-121)||(46596573-46596663)
chr4 (31-121)||(50959907-50959997)
chr4 (169-303)||(33831827-33831958)
chr4 (31-121)||(6679360-6679450)
chr4 (31-121)||(22505505-22505595)
[»] chr3 (1 HSPs)
chr3 (36-116)||(36497942-36498022)
[»] chr8 (3 HSPs)
chr8 (31-121)||(43734134-43734224)
chr8 (169-309)||(36997904-36998041)
chr8 (19-115)||(36998094-36998186)
[»] chr2 (2 HSPs)
chr2 (31-121)||(38503446-38503536)
chr2 (34-115)||(32666011-32666092)
[»] chr7 (5 HSPs)
chr7 (34-121)||(37980655-37980742)
chr7 (34-121)||(45187213-45187300)
chr7 (34-114)||(42360124-42360204)
chr7 (31-115)||(6997934-6998018)
chr7 (53-121)||(44266188-44266256)
[»] chr1 (3 HSPs)
chr1 (36-115)||(35023526-35023605)
chr1 (221-288)||(19824981-19825048)
chr1 (33-85)||(52982024-52982076)
[»] chr5 (2 HSPs)
chr5 (31-121)||(18843-18933)
chr5 (31-121)||(21292229-21292319)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 13328105 - 13328492
Alignment:
Q  19 gggcagccggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  13328105 gggcagccggggacaaataacacataatccaaggatagagatagcaaaggtgaagctttaccaataccaataacctgcgccttagaatcattagcaaggg 13328204  T
Q  119 taannnnnnnnnnnnnnnnnaggaggcgtcaagttataaacaaaggacaaattaccaactacatgatcagaagaagtgcctgaatctaaaatccatgacc 218  Q
    |||                 |||||| |||||||||||||||| ||||  |||||||||||||||||||||||    |||||||||||||||||||||||    
T  13328205 taattttgtgaggtagttttaggaggtgtcaagttataaacaagggacggattaccaactacatgatcagaagc---gcctgaatctaaaatccatgacc 13328301  T
Q  219 cgatagagtgagactggaaaactgttgaattacttacatgagccattgtgactgaagttgaaacctcttggacaaccatcaaataaaaacacaaatatcg 318  Q
    | |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13328302 ccatagagtgagatgggcaaactgttgaattacttacatgagccattgtgactgaagttgaaacctcttggacaaccatcaaataaaaacacaaatatcg 13328401  T
Q  319 gaataaactaactgcaaacatttcaaacaacaatgataaaatgggcggatatccactgtagatgcaaaatacaacagtgatttactggaaa 409  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13328402 gaacaaactaactgcaaacctttcaaacaacaatgataaaatgggcggatatccactgtagatgcaaaatacaaaagtgatttactggaaa 13328492  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 37919671 - 37919953
Alignment:
Q  17 aggggcagccggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaac 116  Q
    ||||||| || || |||||||||||||||||||| | ||||||||  || ||||| |||| ||||||||| ||||| || ||||||||| |||||||||     
T  37919671 aggggcaaccaggcacaaataacacataatccaaaggtagagatggcaagggtgacgcttgaccaataccggtaacttgtgccttagaaccattagcaag 37919770  T
Q  117 ggtaannnnnnnnnnnnnnnnnaggaggcgtcaagttataaacaaaggacaaattaccaactacatgatcagaagaagtgcctgaatctaaaatccatga 216  Q
    |||||                 |||||| | ||| ||||||| ||  |||| ||||||||||||||||||||||| |   || |||||||||||||||||    
T  37919771 ggtaatgctgtgaggtatttt-aggaggtgacaaattataaataagagacatattaccaactacatgatcagaagca---cccgaatctaaaatccatga 37919866  T
Q  217 cccgatagagtgagactggaaaactgttgaattacttacatgagccattgtgactgaagttgaaacctcttggacaaccatcaaata 303  Q
     || |||||||||||   | |||| || |||||||| | ||||| || ||| || ||||||||||||| ||||  ||||||||||||    
T  37919867 tcccatagagtgagataagcaaaccgtagaattactgaaatgagacaatgtaaccgaagttgaaaccttttgggaaaccatcaaata 37919953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 33832108 - 33832004
Alignment:
Q  17 aggggcagccggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaac 116  Q
    |||||||||| || |||||||||||||||||||| | ||||||||  || ||||| |||| ||||||||| ||||| || ||||||||| |||||||||     
T  33832108 aggggcagccaggcacaaataacacataatccaaaggtagagatggcaagggtgacgcttgaccaataccggtaacttgtgccttagaaccattagcaag 33832009  T
Q  117 ggtaa 121  Q
    |||||    
T  33832008 ggtaa 33832004  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 37074263 - 37074181
Alignment:
Q  34 aataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaac 116  Q
    ||||||||||||| ||| ||||||||||  | ||| ||||||| ||||||||||||||| || ||||||||||||||||||||    
T  37074263 aataacacataattcaatgatagagatggcagaggagaagcttgaccaataccagtaacttgtgccttagaatcattagcaac 37074181  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 46596573 - 46596663
Alignment:
Q  31 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 121  Q
    |||||||||||||||| ||| ||||||||||| | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  46596573 acaaataacacataattcaatgatagagatgatagaggtgatgcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 46596663  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 50959997 - 50959907
Alignment:
Q  31 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 121  Q
    |||||||||||||||| ||| ||||||||||  | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  50959997 acaaataacacataattcaatgatagagatggcagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 50959907  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 33831958 - 33831827
Alignment:
Q  169 attaccaactacatgatcagaagaagtgcctgaatctaaaatccatgacccgatagagtgagactggaaaactgttgaattacttacatgagccattgtg 268  Q
    |||||||||||||| |||||||| |   || ||||||||||||||||| || |||||||||||   | |||| || |||||||| | |||||||| |||     
T  33831958 attaccaactacataatcagaagca---cccgaatctaaaatccatgatcccatagagtgagataagcaaaccgtagaattactgaaatgagccaatgta 33831862  T
Q  269 actgaagttgaaacctcttggacaaccatcaaata 303  Q
    || ||||||||||||| ||||  | ||||||||||    
T  33831861 accgaagttgaaaccttttggtaagccatcaaata 33831827  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 6679450 - 6679360
Alignment:
Q  31 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 121  Q
    |||||||||||||||| ||| ||||||||||  | |||||| || | ||||| ||||||||| || ||||||||| ||||||||| |||||    
T  6679450 acaaataacacataattcaatgatagagatggtagaggtgaggcctgaccaaaaccagtaacttgtgccttagaaccattagcaagggtaa 6679360  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 22505505 - 22505595
Alignment:
Q  31 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 121  Q
    ||||||||||||||||  || ||||||||||  | |||||| |  | |||||||| |||||| || ||||||||| ||||||||| |||||    
T  22505505 acaaataacacataattaaatgatagagatggtagaggtgatgtctgaccaatactagtaacttgtgccttagaaccattagcaagggtaa 22505595  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 36498022 - 36497942
Alignment:
Q  36 taacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaac 116  Q
    ||||||||||| ||||||||||||||  | ||| ||||||| ||||||||||||||| || ||||||||| ||||||||||    
T  36498022 taacacataattcaaggatagagatggcagaggagaagcttgaccaataccagtaacttgtgccttagaaccattagcaac 36497942  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 43734224 - 43734134
Alignment:
Q  31 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 121  Q
    |||||||||||||||| ||| ||||||||||  | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  43734224 acaaataacacataattcaatgatagagatggtagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 43734134  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 309
Target Start/End: Complemental strand, 36998041 - 36997904
Alignment:
Q  169 attaccaactacatgatcagaagaagtgcctgaatctaaaatccatgacccgatagagtgagactggaaaactgttgaattacttacatgagccattgtg 268  Q
    ||||||||||||||||||||||| |   || ||||||||||||| ||| || ||||| |||||   | | | ||| |||||||| | |||||||| |||     
T  36998041 attaccaactacatgatcagaagca---cccgaatctaaaatccgtgatcccatagaatgagataagcagattgtagaattactgaaatgagccaatgta 36997945  T
Q  269 actgaagttgaaacctcttggacaaccatcaaataaaaaca 309  Q
    || ||||||||||||| |||| || |||||||||| |||||    
T  36997944 accgaagttgaaaccttttgggcagccatcaaatacaaaca 36997904  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 36998186 - 36998094
Alignment:
Q  19 gggcagccggggacaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaa 115  Q
    |||||||| || |||||||||||||||| ||||| ||||||||  |  ||||||||||    |||||||||||| || ||||||||| |||||||||    
T  36998186 gggcagccaggtacaaataacacataatgcaagggtagagatggcaggggtgaagctt----aataccagtaacttgtgccttagaaccattagcaa 36998094  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 38503536 - 38503446
Alignment:
Q  31 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 121  Q
    |||||||||||||||| ||| ||||||||||  | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  38503536 acaaataacacataattcaatgatagagatggtagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 38503446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 32666011 - 32666092
Alignment:
Q  34 aataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaa 115  Q
    |||| ||||| || ||||| ||||||||  ||||||||||||| ||||||||||||||| || | ||||||| |||||||||    
T  32666011 aataccacatgattcaagggtagagatggcaaaggtgaagcttgaccaataccagtaacttgtgacttagaagcattagcaa 32666092  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 37980655 - 37980742
Alignment:
Q  34 aataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 121  Q
    ||||||||||||| ||| ||||||||||  | ||| ||||||| ||||||||||||||  || ||||||||| |||||||||| ||||    
T  37980655 aataacacataattcaatgatagagatggcagaggagaagcttgaccaataccagtaaattgtgccttagaaccattagcaacagtaa 37980742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 45187213 - 45187300
Alignment:
Q  34 aataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 121  Q
    |||||||| |||| ||| ||||||||||  | ||| ||||||| ||||||||||||||| || ||||||||| |||||||||| ||||    
T  45187213 aataacacctaattcaatgatagagatggcagaggagaagcttgaccaataccagtaacttgtgccttagaaccattagcaacagtaa 45187300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 42360124 - 42360204
Alignment:
Q  34 aataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagca 114  Q
    ||||||||||||| ||| ||||||||||  | ||| ||||||| ||||||||||||||| || |||||| || ||||||||    
T  42360124 aataacacataattcaatgatagagatggcagaggagaagcttgaccaataccagtaacttgtgccttataaccattagca 42360204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 6998018 - 6997934
Alignment:
Q  31 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaa 115  Q
    |||||||| ||||| | ||| ||||||||||  | |||||| || | ||||||||||||||| || ||||||||| |||||||||    
T  6998018 acaaataaaacatagttcaatgatagagatggcagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaa 6997934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 44266188 - 44266256
Alignment:
Q  53 atagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 121  Q
    |||||||||  | |||||| || | ||||||||||||||| || ||||||||| ||||||||| |||||    
T  44266188 atagagatggcagaggtgaggcctgaccaataccagtaacttgtgccttagaaccattagcaagggtaa 44266256  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 35023605 - 35023526
Alignment:
Q  36 taacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaa 115  Q
    ||||||||||| ||  ||||||||||| ||||||||| ||| ||||||||||||||| || ||||| ||| |||||||||    
T  35023605 taacacataattcagagatagagatgacaaaggtgaaacttgaccaataccagtaacttgtgccttggaaccattagcaa 35023526  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 19824981 - 19825048
Alignment:
Q  221 atagagtgagactggaaaactgttgaattacttacatgagccattgtgactgaagttgaaacctcttg 288  Q
    |||||||||||  || ||||||| |||||||| | |||||||| ||||||||| ||||||||||||||    
T  19824981 atagagtgagataggcaaactgtagaattactgaaatgagccaatgtgactgacgttgaaacctcttg 19825048  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 52982024 - 52982076
Alignment:
Q  33 aaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaatac 85  Q
    |||||||||||||| |||||||| |||||  | ||||||||||| ||||||||    
T  52982024 aaataacacataattcaaggataaagatggcagaggtgaagcttgaccaatac 52982076  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 18933 - 18843
Alignment:
Q  31 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 121  Q
    |||||||||||||||| ||| ||||||||||  | |||||| || | ||||||||||||||| || |||||||||  |||||||| |||||    
T  18933 acaaataacacataattcaatgatagagatggcagaggtgaggcctgaccaataccagtaacttgtgccttagaacaattagcaagggtaa 18843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 21292319 - 21292229
Alignment:
Q  31 acaaataacacataatccaaggatagagatgaaaaaggtgaagctttaccaataccagtaacctgcgccttagaatcattagcaacggtaa 121  Q
    |||||||||||||||| ||| |||| |||||  |  ||||| || | ||||||||||||||| ||  |||||||| ||||||||| |||||    
T  21292319 acaaataacacataattcaatgataaagatggcaggggtgaggcctgaccaataccagtaacttgttccttagaaccattagcaagggtaa 21292229  T

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