View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20877_low_9 (Length: 342)
Name: NF20877_low_9
Description: NF20877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20877_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 39475645 - 39475315
Alignment:
| Q |
1 |
tgagagattctgagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgattactaaaacagttgctcggagacggttatcacg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
39475645 |
tgagagattctgagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaacagttactcggagacggttatcacg |
39475546 |
T |
|
| Q |
101 |
attgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttggatatacac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39475545 |
attgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttggatatacac |
39475446 |
T |
|
| Q |
201 |
ttgatcagtgtgactgtgttttgaattgttgttttgatgttcctgttatttaaataggaataggaatagtgtagataattattagtatgaatataattat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39475445 |
ttgatcagtgtgactgtgttttgaattgttgttttgatgttcctgttatttaaataggaataggaatagtgtagataattattagtatgaatataattat |
39475346 |
T |
|
| Q |
301 |
attatactaggagtgtttgatgcatgttctt |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
39475345 |
attatactaggagtgtttgatgcatgttctt |
39475315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 39451139 - 39450949
Alignment:
| Q |
1 |
tgagagattctgagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgattactaaaacagttgctcggagacggttatcacg |
100 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
39451139 |
tgagagaatctgagataggaagggatttagtgttgacatcattttctgatatatgtgggaatttgataactaaaacagttactcggagacggttatcacg |
39451040 |
T |
|
| Q |
101 |
attgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttg |
191 |
Q |
| |
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|||||||||||||||| | || ||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39451039 |
attgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttcttcatcttg |
39450949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 39472164 - 39471983
Alignment:
| Q |
12 |
gagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgattactaaaacagttgctcggagacggttatcacgattgattagaa |
111 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |
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| T |
39472164 |
gagataggaagggatttagtgtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaa |
39472065 |
T |
|
| Q |
112 |
gcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttgga |
193 |
Q |
| |
|
||||| ||||||| || | |||| || ||| | | | | |||||||||| |||||||||||||||||||||||||||||| |
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| T |
39472064 |
gcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagggacaaacaccacttctgctttcttcatcttgga |
39471983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 39454767 - 39454592
Alignment:
| Q |
12 |
gagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgattactaaaacagttgctcggagacggttatcacgattgattagaa |
111 |
Q |
| |
|
||||| ||||| |||||| ||| |||||| |||| || |||||| ||||||| |||||||||||| |||||||||||||||||| |||||||||| |
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| T |
39454767 |
gagattggaagagatttactgtatacatcagtttcagtggcgtgtggaaatttgaggactaaaacagttattcggagacggttatcacggttgattagaa |
39454668 |
T |
|
| Q |
112 |
gcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcat |
187 |
Q |
| |
|
| ||| | |||||||| ||||||| || ||||| | ||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
39454667 |
gtttcgcgaactcaagggtggaaactaaatggccaacaccaggagaagggataaacaccacttctgctttcttcat |
39454592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 39458343 - 39458536
Alignment:
| Q |
20 |
aagggatttagtgttgacatcattttctgttatgtgtgggaatttgattactaaaacagttgctcggagacggttatcacgattgattagaagcttcaca |
119 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||||||| ||||| || || || | |||| |||||||||||||||||| |||||||||||||| || |
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| T |
39458343 |
aagggatttagtgtagacatctatttctgttgtgtgtggaaatttcatgaccaagatagttattcggagacggttatcacggttgattagaagctttgca |
39458442 |
T |
|
| Q |
120 |
aactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttggatatacacttgatcagtgtga |
213 |
Q |
| |
|
|| || || ||||||| |||||| | | ||| || ||| ||||| |||||||||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
39458443 |
aattcgagggtggaaactagatgaccaacaccaggtgaagagataatcaccacttctgctttcttcatcctggatatgcacttactcagtgtga |
39458536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 39460372 - 39460197
Alignment:
| Q |
18 |
ggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgattactaaaacagttgctcggagacggttatcacgattgattagaagcttca |
117 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| | ||| ||||| ||| || |||| ||||| |||||| || |||||||| ||| |||||||||| |
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| T |
39460372 |
ggaagtgatttagtgttaacatcggattctgatgtgtatgggagtttcatgactaggacagtaattcggaggcgcttatcacggttggttagaagctttg |
39460273 |
T |
|
| Q |
118 |
caaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttgga |
193 |
Q |
| |
|
| |||||||| |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
39460272 |
cgaactcaagggtggaatctagatggctcggaccgggaaaagggataaacacaacttctgctttcttcatcttgga |
39460197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 39480441 - 39480300
Alignment:
| Q |
72 |
aaaacagttgctcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacacca |
171 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||| | || ||||| ||||||| |||||| | | ||| || ||||||||| ||||| |
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|
| T |
39480441 |
aaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcacca |
39480342 |
T |
|
| Q |
172 |
cttctgctttcttcatcttggatatacacttgatcagtgtga |
213 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||||||| |
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|
| T |
39480341 |
cttctgctttcttcatcctggatatgcacttactcagtgtga |
39480300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 39486547 - 39486405
Alignment:
| Q |
52 |
tgtgtgggaatttgattactaaaacagttgctcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagacc |
151 |
Q |
| |
|
|||||||||||||||| || || | ||| |||||||||||||||||| |||||||||||||| |||| ||||| ||||||| |||||| | | ||| |
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|
| T |
39486547 |
tgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacacc |
39486448 |
T |
|
| Q |
152 |
gggaaaagggataaacaccacttctgctttcttcatcttggat |
194 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39486447 |
aggtgaagggataatcaccacttctgctttcttcatcttggat |
39486405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 39464617 - 39464750
Alignment:
| Q |
54 |
tgtgggaatttgattactaaaacagttgctcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgg |
153 |
Q |
| |
|
||||||| |||||| ||||| | ||| |||||||||||||||||| ||||||||||||||| |||||||||| | |||| |||||| | | | ||| |
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|
| T |
39464617 |
tgtgggagtttgatgactaagatggttattcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgg |
39464716 |
T |
|
| Q |
154 |
gaaaagggataaacaccacttctgctttcttcat |
187 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
39464717 |
gaaaagggataaacactacttctgctttcttcat |
39464750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 188
Target Start/End: Original strand, 43312626 - 43312730
Alignment:
| Q |
84 |
cggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttct |
183 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||||| ||||| | || ||| | || ||| ||| |||||||||||||||||||| ||||| |
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|
| T |
43312626 |
cggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataaacaccacttctagtttct |
43312725 |
T |
|
| Q |
184 |
tcatc |
188 |
Q |
| |
|
||||| |
|
|
| T |
43312726 |
tcatc |
43312730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 39470788 - 39470979
Alignment:
| Q |
2 |
gagagattctgagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgattactaaaacagttgctcggagacggttatcacga |
101 |
Q |
| |
|
|||||| || ||||| |||| |||||||| || ||||||| ||||| ||||||||||||| || ||||| |||||| || ||| ||||||||| | |
|
|
| T |
39470788 |
gagagaatcagagatgggaatggatttagcgtagacatcagattctgcagtgtgtgggaatttcatgactaagacagttattcagaggcggttatcatgg |
39470887 |
T |
|
| Q |
102 |
ttgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttgga |
193 |
Q |
| |
|
|||||||||||||| | ||||| | | |||| |||||| | | | ||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
39470888 |
ttgattagaagcttggcgaactctaaggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactttcttcatgttgga |
39470979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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