View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20878_low_2 (Length: 462)

Name: NF20878_low_2
Description: NF20878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20878_low_2
NF20878_low_2
[»] chr2 (4 HSPs)
chr2 (7-330)||(5691719-5692044)
chr2 (373-445)||(5691604-5691676)
chr2 (241-315)||(5691316-5691390)
chr2 (75-132)||(5681950-5682007)
[»] chr5 (8 HSPs)
chr5 (241-330)||(11737148-11737237)
chr5 (371-445)||(11737278-11737352)
chr5 (253-330)||(32433747-32433824)
chr5 (373-445)||(32433866-32433938)
chr5 (240-315)||(11737564-11737639)
chr5 (241-316)||(33489980-33490055)
chr5 (371-430)||(33490101-33490161)
chr5 (250-315)||(32434139-32434204)
[»] chr8 (3 HSPs)
chr8 (241-327)||(10207178-10207264)
chr8 (375-445)||(10207060-10207130)
chr8 (241-315)||(10206772-10206846)
[»] chr7 (2 HSPs)
chr7 (240-330)||(42696921-42697011)
chr7 (241-315)||(42696558-42696632)
[»] chr4 (1 HSPs)
chr4 (245-296)||(35446840-35446891)
[»] chr3 (1 HSPs)
chr3 (241-289)||(44785069-44785117)


Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 330
Target Start/End: Complemental strand, 5692044 - 5691719
Alignment:
Q  7 agataatacttaatgttccgtacaatattatatttatgttaattagaaaaagaaactactaatcatattggttaactaagaaaagaacctattcaaaggt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  5692044 agataatacttaatgttccgtacaatattatatttatgttaattagaaaaagaaactactaattatattggttacctaagaaaagaacctattcaaaggt 5691945  T
Q  107 tccaaagttcattgaaagaattttcaattcaaaaaagaaactgaaatggagcaactgttgtgt--aaagcaagttcgttattagtagttggagtgaaata 204  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  5691944 tccaaagttcattgaaagaactttcaattcaaaaaagaaactgaaatggagcaactgttgtgtgtaaagcaagttcgttattagtagttggagtgaaata 5691845  T
Q  205 actcaatctaatcatattcatatcatataaataaatgagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtga 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5691844 actcaatctaatcatattcatatcatataaataaatgagaaattcttgtgtagaaacgcatttaacacttgtcatttacaaacaacgaataaaagtgtga 5691745  T
Q  305 cacgtaattaaatcaagcacatcatt 330  Q
    |||||||||||||  |||||||||||    
T  5691744 cacgtaattaaatggagcacatcatt 5691719  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 373 - 445
Target Start/End: Complemental strand, 5691676 - 5691604
Alignment:
Q  373 gttccttctctctcccatcatctattttttctggcatatatggttccccaacaatactgctatttaaggaaca 445  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5691676 gttccttctctctcccatcatccattttttctggcatatatggttccccaacaatactgctatttaaggaaca 5691604  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 5691316 - 5691390
Alignment:
Q  241 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaa 315  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||    
T  5691316 gagaaattcttgtatagaaacgcacctaacacttgtcatttacaaacaacgaataagagtgtgacacataattaa 5691390  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 5682007 - 5681950
Alignment:
Q  75 tggttaactaagaaaagaacctattcaaaggttccaaagttcattgaaagaattttca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5682007 tggttaactaagaaaagaacctattcaaaggttccaaagttcattgaaagaattttca 5681950  T

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Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 11737148 - 11737237
Alignment:
Q  241 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaaatcaagcacatcatt 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11737148 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaaatcaagcacatcatt 11737237  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 11737278 - 11737352
Alignment:
Q  371 ctgttccttctctctcccatcatctattttttctggcatatatggttccccaacaatactgctatttaaggaaca 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11737278 ctgttccttctctctcccatcatctattttttctggcatatatggttccccaacaatactgctatttaaggaaca 11737352  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 32433747 - 32433824
Alignment:
Q  253 tgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaaatcaagcacatcatt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||    
T  32433747 tgtagaaacgcacttaacacttgtcatttacaaacaacgaataagagtgtaacacgtaattaaaacaggcacatcatt 32433824  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 373 - 445
Target Start/End: Original strand, 32433866 - 32433938
Alignment:
Q  373 gttccttctctctcccatcatctattttttctggcatatatggttccccaacaatactgctatttaaggaaca 445  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  32433866 gttccttctctctcccatcatccattttttcaggcatatatggttccccaacaatattgctatttaaggaaca 32433938  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 11737639 - 11737564
Alignment:
Q  240 tgagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaa 315  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  11737639 tgagaaattcttgtgtagaaacgtatctaacacttgtcatttacaaacaacgaataagagtgtaacacataattaa 11737564  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 33489980 - 33490055
Alignment:
Q  241 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaaa 316  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| | |||||||| ||||||||    
T  33489980 gagaaattcttgtgtagaaacacacttaacacttatcaattacaaacaacgaataagaatgtgacacataattaaa 33490055  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 430
Target Start/End: Original strand, 33490101 - 33490161
Alignment:
Q  371 ctgttccttctctctcccatcatctattttttctggcatatatggtt-ccccaacaatact 430  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  33490101 ctgttccttctctctcccatcatccattttttctggcatatatggttcccccaacaatact 33490161  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 32434204 - 32434139
Alignment:
Q  250 ttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaa 315  Q
    ||||||| ||||| |  |||||||||||||||||||| ||||||| | |||||||||| |||||||    
T  32434204 ttgtgtaaaaacgtatctaacacttgtcatttacaaataacgaattagagtgtgacacataattaa 32434139  T

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Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 241 - 327
Target Start/End: Complemental strand, 10207264 - 10207178
Alignment:
Q  241 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaaatcaagcacatc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10207264 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacctaattaaatcaagcacatc 10207178  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 375 - 445
Target Start/End: Complemental strand, 10207130 - 10207060
Alignment:
Q  375 tccttctctctcccatcatctattttttctggcatatatggttccccaacaatactgctatttaaggaaca 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10207130 tccttctctctcccatcatctattttttctggcatatatggttccccaacaataatgctatttaaggaaca 10207060  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 10206772 - 10206846
Alignment:
Q  241 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaa 315  Q
    |||||||||||||||||||||| |  |||||  ||||||||||||||||||||||| |||||||||| |||||||    
T  10206772 gagaaattcttgtgtagaaacgtatctaacatatgtcatttacaaacaacgaataagagtgtgacacataattaa 10206846  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 240 - 330
Target Start/End: Complemental strand, 42697011 - 42696921
Alignment:
Q  240 tgagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaaatcaagcacatcatt 330  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||| |  ||||||||||    
T  42697011 tgagaaattcttgtgtagaaacgcatttaacatttgtcatttacaaacaacgaataagagtgtgacatgtaattaaaactggcacatcatt 42696921  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 42696558 - 42696632
Alignment:
Q  241 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataaaagtgtgacacgtaattaa 315  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||||||| |||| |||||||||| |||||||    
T  42696558 gagaaattcttgtatagaaacgcatctaacacttgtcatttacaaacaacgcataagagtgtgacacataattaa 42696632  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 35446891 - 35446840
Alignment:
Q  245 aattcttgtgtagaaacgcacttaacacttgtcatttacaaacaacgaataa 296  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35446891 aattcttgtgtagaaacgtacttaacacttgtcatttacaaacaacgaataa 35446840  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 44785069 - 44785117
Alignment:
Q  241 gagaaattcttgtgtagaaacgcacttaacacttgtcatttacaaacaa 289  Q
    |||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  44785069 gagaaattttagtgtagaaacgcacttaacacttgttatttacaaacaa 44785117  T

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