View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20878_low_4 (Length: 444)
Name: NF20878_low_4
Description: NF20878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20878_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 37976498 - 37976199
Alignment:
| Q |
18 |
acaatgattggatacttggagattcaggtaataataagagtaaaagagggtcccttatcaagtagcttatattagaatatttttatcctataactgaagc |
117 |
Q |
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| T |
37976498 |
acaatgattggatacttggagattcaggtaataataagagtaaaagagggtcccttatcaagtagcttatattagaatatttttatcctataactgaagc |
37976399 |
T |
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| Q |
118 |
tgactcaaaagttgcagttgtgggctagactttataattggtgctaaaaaatactcaacactttgtgctatatgtcattattcaatgttcacatcaatgc |
217 |
Q |
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| T |
37976398 |
tgactcaaaagttgcagttgtgggctagactttataattggtgctaaaaaatactcaacactttgtgctatatgtcattattcaatgttcacatcaatgc |
37976299 |
T |
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| Q |
218 |
tcctttggccataatgccagagacactccaatagctttagttctgtcatgcagtagtatactgacatttatgtattctatataagtgttggaaatggttt |
317 |
Q |
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| T |
37976298 |
tcctttggccataatgccagagacactccaatagctttagttctgtcatgcagtagtatactgacatttatgtattctatataagtgttggaaatggttt |
37976199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 37976152 - 37976070
Alignment:
| Q |
343 |
agccaagggactaaaaatagctctactatacacaaaattgagcacttctagcatatgattttgaaattggttgattttggtac |
425 |
Q |
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| T |
37976152 |
agccaagggactaaaaatagctctactatacacaaaattgagcacttctagcatatgattttgaaattggttgattttggtac |
37976070 |
T |
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