View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20879_high_3 (Length: 320)
Name: NF20879_high_3
Description: NF20879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20879_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 6026129 - 6026431
Alignment:
| Q |
4 |
atgtcgaagaatatggaggtagaaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtg |
103 |
Q |
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| T |
6026129 |
atgtcaaagaaaagggaggtagaaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtg |
6026228 |
T |
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| Q |
104 |
aagctactcaagtaccaagcagaacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatag |
203 |
Q |
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| T |
6026229 |
aagctactcaagtgccaagcagaacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatag |
6026328 |
T |
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| Q |
204 |
tccttgaatattgtattattttccattttaattatctactacattgtattatgactcagaatgatgatctttcatctcattctctagttcttatgtagtt |
303 |
Q |
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| T |
6026329 |
tccttgaatattgtattattttccattttaattatctactacattgtattatgactcagaatgatgatcttttatctcattctctagttcttatgtagtt |
6026428 |
T |
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| Q |
304 |
tgt |
306 |
Q |
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||| |
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| T |
6026429 |
tgt |
6026431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 42824276 - 42824335
Alignment:
| Q |
147 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
206 |
Q |
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| T |
42824276 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
42824335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 42824166 - 42824239
Alignment:
| Q |
49 |
atagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaag |
122 |
Q |
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| T |
42824166 |
atagggtcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaag |
42824239 |
T |
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