View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20879_high_4 (Length: 316)

Name: NF20879_high_4
Description: NF20879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20879_high_4
NF20879_high_4
[»] chr1 (11 HSPs)
chr1 (22-313)||(13701435-13701726)
chr1 (22-313)||(14316313-14316602)
chr1 (20-306)||(19155122-19155403)
chr1 (22-313)||(13530857-13531147)
chr1 (20-304)||(13461497-13461766)
chr1 (22-307)||(13563127-13563398)
chr1 (18-155)||(13628496-13628633)
chr1 (208-313)||(13628379-13628484)
chr1 (166-211)||(13479783-13479828)
chr1 (259-307)||(20575478-20575526)
chr1 (20-63)||(20575390-20575433)
[»] scaffold0006 (3 HSPs)
scaffold0006 (22-258)||(193504-193739)
scaffold0006 (166-211)||(128792-128837)
scaffold0006 (166-211)||(215146-215191)
[»] chr3 (1 HSPs)
chr3 (79-260)||(758948-759127)
[»] chr6 (1 HSPs)
chr6 (167-211)||(22267548-22267592)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 13701726 - 13701435
Alignment:
Q  22 gagtgctggagtgtttttgaggaaatgctgagtactgggtttgttcctagttgttcgttgtttgataaggtggctgggaagctttgtgagaatggggatg 121  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||||| |||  ||||||||||||||||||||| |    
T  13701726 gagtgttggagtgtttttgaagaaatgctgagtgctgggtttgttcctggttgtttgttgtttgataaggtagctaagaagctttgtgagaatggggaag 13701627  T
Q  122 tggagaaggtgaatgatatgttgaccgtgttgttagatatagggtttttgccgagtgatgttacttattctcatttgatagatgcttatgcgagaaagga 221  Q
    | | |||||||||||||||||||||  |||||||||||| |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  13701626 tcgggaaggtgaatgatatgttgactctgttgttagataaagggcttttgccgagtgatgttatttattctcatttgatagatggttatgcgagaaagga 13701527  T
Q  222 cgaagttcagggagttcttaagatatattatgaaatggagtataagtctatgtgtcctgggttgtctgtttattcatcgatgattctgtgtt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||||||| |||||    
T  13701526 cgaagttcagggagttcttaagatatattatgaaatggagtataagtcaatgtgtcctggattgtctgttttttcctcgatgattcagtgtt 13701435  T

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Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 313
Target Start/End: Original strand, 14316313 - 14316602
Alignment:
Q  22 gagtgctggagtgtttttgaggaaatgctgagtactgggtttgttcctagttgttcgttgtttgataaggtggctgggaagctttgtgagaatggggatg 121  Q
    ||||| |||||||||||||| |||||| |||||  |||||||||||||||| ||| |||||||||||||||||||| |||||||||||   ||||||| |    
T  14316313 gagtgttggagtgtttttgaagaaatgttgagtgttgggtttgttcctagtggtttgttgtttgataaggtggctgagaagctttgtg---atggggaag 14316409  T
Q  122 tggagaaggtgaatgatatgttgaccgtgttgttagatatagggtttttgccgagtgatgttacttatt-ctcatttgatagatgcttatgcgagaaagg 220  Q
    | ||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| |||||  |  | ||||| ||  ||||| ||||||||    
T  14316410 tagagaaggtgaatgatatgttgactgtgttgttagataaagggtttttgcctagtgatgttaattattgattgtctgatacattgttatgagagaaagg 14316509  T
Q  221 acgaagttcagggagttcttaagatatattatgaaatggagtataagtctatgtgtcctgggttgtctgtttattcatcgatgattctgtgtt 313  Q
    |||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||    
T  14316510 acgaagtttaaggagttcttaagatttattatgaaatggagtataagtctatgtgtcctggattttctgtttattcatcgatgattcagtgtt 14316602  T

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Target: chr1; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 19155403 - 19155122
Alignment:
Q  20 aggagtgctggagtgtttttgaggaaatgctgagtactgggtttgttcctagttgttcgttgtttgataaggtggctgggaagctttgtgagaatgggga 119  Q
    ||||||| | |||||||||| |||||||  ||||| |||||| |||||||||||||| |||||| ||||||||||||| ||||| ||||||||| |||||    
T  19155403 aggagtgtttgagtgttttt-aggaaatattgagtgctgggtctgttcctagttgtttgttgttcgataaggtggctgagaagcgttgtgagaaagggga 19155305  T
Q  120 tgtggagaaggtgaatgatatgttgaccgtgttgttagatatagggtttttgccgagtgatgttacttattctcatttgatagatgcttatgcgagaaag 219  Q
     || |||||||||||| |||||||||| ||||||||||||| |||||||||    ||||||||||||||||| ||||||||| ||| ||||||||||| |    
T  19155304 agtagagaaggtgaatcatatgttgactgtgttgttagataaagggttttt----agtgatgttacttattcccatttgatacatggttatgcgagaatg 19155209  T
Q  220 gacgaagttcagggagttcttaagatatattatgaaatggagtataagtctatgtgtcctgggttgtctgtttattcatcgatgatt 306  Q
    ||||| ||| |||||||||||||||||||||||||||  || | || ||||||||||||||| ||| |||||| ||| |||||||||    
T  19155208 gacgaggttgagggagttcttaagatatattatgaaacagaatgtatgtctatgtgtcctggattggctgttttttcgtcgatgatt 19155122  T

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Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 13531147 - 13530857
Alignment:
Q  22 gagtgctggagtgtttttgaggaaatgctgagtactgggtttgttcctagttgttcgttgtttgataaggtggctgggaagctttgtgagaatggggatg 121  Q
    ||||| |||||||||||  | || ||||||| | |||||| ||||| | ||| || |||||||| ||||||||||| |||||||||||||||||| || |    
T  13531147 gagtgttggagtgttttcaaagatatgctgattgctgggtctgttcttggttatttgttgtttggtaaggtggctgagaagctttgtgagaatggagaag 13531048  T
Q  122 tggagaaggtgaatgatatgttgaccgtgttgttagatatagggtttttgccgagtga-tgttacttattctcatttgatagatgcttatgcgagaaagg 220  Q
    |||||||||| |||||||||||| | ||||||||||||| ||| |||||  ||||| | | |||||||||| ||||||||||||| ||| ||||||||||    
T  13531047 tggagaaggtaaatgatatgttgcctgtgttgttagataaaggatttttaacgagtaattcttacttattcacatttgatagatggttacgcgagaaagg 13530948  T
Q  221 acgaagttcagggagttcttaagatatattatgaaatggagtataagtctatgtgtcctgggttgtctgtttattcatcgatgattctgtgtt 313  Q
    || ||||||| ||||||||||||||||||||||||||  ||||||||||  |||||||||| ||  |||||||||| || ||||||| |||||    
T  13530947 acaaagttcaaggagttcttaagatatattatgaaatacagtataagtc--tgtgtcctggatttgctgtttattcgtctatgattcagtgtt 13530857  T

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Target: chr1; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 13461766 - 13461497
Alignment:
Q  20 aggagtgctggagtgtttttgaggaaatgctgagtactgggtttgttcctagttgttcgttgtttgataaggtggctgggaagctttgtgagaatgggga 119  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  13461766 aggagtgttggagtgtttttgaggacatgctgagtgctgggtttgttcctagttgtttattgtttgataaggtggctgagaagctttgtgagaatgggga 13461667  T
Q  120 tgtggagaaggtgaatgatatgttgaccgtgttgttagatatagggtttttgccgagtgatgttacttattctcatttgatagatgcttatgcgagaaag 219  Q
    |||| | ||||| ||||||||| |||  ||| |          |||||||| |  ||| ||| ||||||||| ||||||||| ||| |||||||||||||    
T  13461666 tgtgtaaaaggtaaatgatatgctga--gtgct----------gggtttttactaagtaatg-tacttattcacatttgatacatggttatgcgagaaag 13461580  T
Q  220 gacgaagttcagggagttcttaagatatattatgaaatggagtataagtctatgtgtcctgggttgtctgtttattcatcgatga 304  Q
    ||||||||||| ||||||||||||||||||||||||||  | || |||  |||||||||||| |||||||||||||| |||||||    
T  13461579 gacgaagttcaaggagttcttaagatatattatgaaataaaatacaag--tatgtgtcctggattgtctgtttattcgtcgatga 13461497  T

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Target: chr1; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 22 - 307
Target Start/End: Complemental strand, 13563398 - 13563127
Alignment:
Q  22 gagtgctggagtgtttttgaggaaatgctgagtactgggtttgttcctagttgttcgttgtttgataaggtggctgggaagctttgtgagaatggggatg 121  Q
    ||||| |||||||||||||| |||||| ||| |  ||||||||||||| ||||||  ||||||||||||||||| | |||||||||||||||||||||||    
T  13563398 gagtgttggagtgtttttgaagaaatgatgaatgttgggtttgttcctggttgtttattgtttgataaggtggccgagaagctttgtgagaatggggatg 13563299  T
Q  122 tggagaaggtgaatgatatgttgaccgtgttgttagatatagggtttttgccgagtgatgttacttattctcatttgatagatgcttatgcgagaaagga 221  Q
     ||||||||| ||||||||| |||  ||| ||          ||||||| |||||| |||||||| |||| ||||||||||||| |||||||||||||||    
T  13563298 cggagaaggtaaatgatatgctga--gtgctg----------ggtttttaccgagtaatgttactgattcacatttgatagatggttatgcgagaaagga 13563211  T
Q  222 cgaagttcagggagttcttaagatatattatgaaatggagtataagtctatgtgtcctgggttgtctgtttattcatcgatgattc 307  Q
    ||||||  |  |||||||||| ||||||||| ||||||||||||||||  |||||||||| | |||||||||| | ||||||||||    
T  13563210 cgaagtgaaaagagttcttaatatatattataaaatggagtataagtc--tgtgtcctggatcgtctgtttatccgtcgatgattc 13563127  T

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Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 13628633 - 13628496
Alignment:
Q  18 ggaggagtgctggagtgtttttgaggaaatgctgagtactgggtttgttcctagttgttcgttgtttgataaggtggctgggaagctttgtgagaatggg 117  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | |||| |||||||||  | ||||||||| |||||||||    
T  13628633 ggaggggtgctggagtgtttttgaggaaatgctgagtgctgggtttgttccttgttgttcatcgtttaataaggtggtggagaagctttgagagaatggg 13628534  T
Q  118 gatgtggagaaggtgaatgatatgttgaccgtgttgtt 155  Q
    || || |||| ||||||||||||| |||| ||||||||    
T  13628533 gaagtagagagggtgaatgatatgctgactgtgttgtt 13628496  T

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Target: chr1; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 208 - 313
Target Start/End: Complemental strand, 13628484 - 13628379
Alignment:
Q  208 tatgcgagaaaggacgaagttcagggagttcttaagatatattatgaaatggagtataagtctatgtgtcctgggttgtctgtttattcatcgatgattc 307  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||   || |||||||||  ||| ||||||||||    
T  13628484 tatgcgagaaaggacgaggttcagggagttcttaagagatattatgaaatggagtataagtccatgtgttggggattgtctgttgtttcctcgatgattc 13628385  T
Q  308 tgtgtt 313  Q
     |||||    
T  13628384 agtgtt 13628379  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 13479783 - 13479828
Alignment:
Q  166 tttttgccgagtgatgttacttattctcatttgatagatgcttatg 211  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  13479783 tttttgccgagtgatgttacttattctcatttgatacatggttatg 13479828  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 20575478 - 20575526
Alignment:
Q  259 gagtataagtctatgtgtcctgggttgtctgtttattcatcgatgattc 307  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  20575478 gagtacaagtctatgtgtcctggattgtctgtttattcgtcgatgattc 20575526  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 20575390 - 20575433
Alignment:
Q  20 aggagtgctggagtgtttttgaggaaatgctgagtactgggttt 63  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||||    
T  20575390 aggagtgttggagtgtttttgaggacatgctgagtgctgggttt 20575433  T

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Target: scaffold0006 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 193739 - 193504
Alignment:
Q  22 gagtgctggagtgtttttgaggaaatgctgagtactgggtttgttcctagttgttcgttgtttgataaggtggctgggaagctttgtgagaatggggatg 121  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||| | |||||| |||||||||||| || || | |||||||||||| ||| || | |    
T  193739 gagtgttggagtgtttttgaagaaatgctgagtgctgggtttgttcttggttgtttgttgtttgataaagtagcggagaagctttgtga-aataggaaag 193641  T
Q  122 tggagaaggtgaatgatatgttgaccgtgttgttagatatagggtttttgccgagtgatgttacttattctcatttgatagatgcttatgcgagaaagga 221  Q
    | |||||||||| ||||||||||||  |||||||||||| |||| ||||  |||| |||||||||||||||||||||||||||| |||||||||||||||    
T  193640 ttgagaaggtgagtgatatgttgactctgttgttagataaagggcttttttcgagcgatgttacttattctcatttgatagatggttatgcgagaaagga 193541  T
Q  222 cgaagttcagggagttcttaagatatattatgaaatg 258  Q
    ||||||||| ||||||  |||||||||||||||||||    
T  193540 cgaagttcaaggagtttgtaagatatattatgaaatg 193504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 128792 - 128837
Alignment:
Q  166 tttttgccgagtgatgttacttattctcatttgatagatgcttatg 211  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||||    
T  128792 tttttgccgagtgatgttacttattctcattttatacatggttatg 128837  T

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Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 215146 - 215191
Alignment:
Q  166 tttttgccgagtgatgttacttattctcatttgatagatgcttatg 211  Q
    ||||| |||||||||||||||||||||||||| ||| ||| |||||    
T  215146 tttttaccgagtgatgttacttattctcattttatacatggttatg 215191  T

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Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 79 - 260
Target Start/End: Original strand, 758948 - 759127
Alignment:
Q  79 ttgtttgataaggtggctgggaagctttgtgagaatggggatgtggagaaggtgaatgatatgttgaccgtgttgttagatatagggtttttgccgagtg 178  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||  |||| || |||||||||| ||||||| |||||||||    
T  758948 ttgtttgatgaggtggctgagaagctttgtgagaatggggatgtggagaaggtgaataatat--tgactgtattgttagataaagggtttctgccgagtg 759045  T
Q  179 atgttacttattctcatttgatagatgcttatgcgagaaaggacgaagttcagggagttcttaagatatattatgaaatgga 260  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||  ||| |  ||| |||||||||||||||||||||||    
T  759046 atgttacttattctcatttgatacatggttatgcgagaaatgacgagattctgaaagtacttaagatatattatgaaatgga 759127  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 22267592 - 22267548
Alignment:
Q  167 ttttgccgagtgatgttacttattctcatttgatagatgcttatg 211  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||    
T  22267592 ttttgctgagtgatgttacttattctcatttgatacatggttatg 22267548  T

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