View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20879_low_2 (Length: 329)
Name: NF20879_low_2
Description: NF20879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20879_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 10121159 - 10120858
Alignment:
| Q |
1 |
attcccatttattagcaaaatccaagtaaaatatagttattgccttaagtatttccaattggtcacatttaagcttgaagttatcacactggaaaatata |
100 |
Q |
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| T |
10121159 |
attcccatttattagcaaaatccaagtaaaatatagttattgccttaactatttccaattggtcacatttaagcttgaagttatcacactggaaaatata |
10121060 |
T |
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| Q |
101 |
gttatgaaatgatgttcataaaagtaaaaggatnnnnnnngtgtgtaagtccatgtgaaaaccgactaataaatgttttcacgagacttctaagaaaagg |
200 |
Q |
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| T |
10121059 |
gttatgaaatgatgttcataaaagtaaaaggataaaaaaagtgtgtaaatccatgtgaaaaccgactaataaatgttttcacgagacttctaagaaaagg |
10120960 |
T |
|
| Q |
201 |
tgcatgttgtacgtgagaatgaaggtatagttacatagaagttatcaaaaaggcatcaccatactctaagaataagaattcctacctgtatcaatgaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
10120959 |
tgcatgttgtacgtgagaatgaaggtatagttacatagaagttatcaaaaaggcatcaccatactctaagaatacga-----cacctgtatcaatgaaac |
10120865 |
T |
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| Q |
301 |
caacaat |
307 |
Q |
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||||||| |
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| T |
10120864 |
caacaat |
10120858 |
T |
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