View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20879_low_5 (Length: 301)
Name: NF20879_low_5
Description: NF20879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20879_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 72 - 292
Target Start/End: Complemental strand, 35864921 - 35864701
Alignment:
| Q |
72 |
gcaatgcatgcatataaagatgttggctgtcaaacgcagaagtaaaagtttaaatagtgttgaatttgttttgggtttgttactatgttttgactttaaa |
171 |
Q |
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| T |
35864921 |
gcaatgcatgcatataaagatgttggctgtcaaacgcagaagtaaaagtttaaatagtgttgaatttgttttgggtttgttaccatgttttgactttaaa |
35864822 |
T |
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| Q |
172 |
atgcattaattcttttgtcttttactaaaatgggaagcatatttaagcacgtgcgattccctttctacatgatcaaagttttagaaatacgtccgaggaa |
271 |
Q |
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| T |
35864821 |
atgcattaattcttttgtcttttactaaaatgggaagcatatttaagcacgtgcgattccctttctacatgatcaaagttttagaaatacgtccgaggaa |
35864722 |
T |
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| Q |
272 |
catagtgatctaaatattctt |
292 |
Q |
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| T |
35864721 |
catagtgatctaaatattctt |
35864701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 141 - 285
Target Start/End: Complemental strand, 34814432 - 34814289
Alignment:
| Q |
141 |
tttgggtttgttactatgttttgactttaaaatgcattaattcttttgtcttttactaaaatgggaagcatatttaagcacgtgcgattccctttctaca |
240 |
Q |
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| T |
34814432 |
tttgggtttgttcttatgttttgactttaaaatgcattgattctt--gtcttttaataaaatgggaagcatatttaagctcttaggattccctttctaca |
34814335 |
T |
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| Q |
241 |
tgatc-aaagttttagaaatacgtccgaggaacatagtgatctaaa |
285 |
Q |
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| T |
34814334 |
tgaacttgagttttagaactaagtccaaggaacatagtgatctaaa |
34814289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 34814617 - 34814565
Alignment:
| Q |
93 |
gttggctgtcaaacgcagaagtaaaagtttaaatagtgttgaatttgttttgg |
145 |
Q |
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| T |
34814617 |
gttggctgtcaaaagcaggagtaaaagtgtaaatagtgttgaatttgttttgg |
34814565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 34814516 - 34814466
Alignment:
| Q |
159 |
ttttgactttaaaatgcattaattcttttgtcttttactaaaatgggaagcat |
211 |
Q |
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| T |
34814516 |
ttttgactttaaaatgcattgattc--ttgtcttttaataaaatgggaagcat |
34814466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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