View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20879_low_6 (Length: 265)
Name: NF20879_low_6
Description: NF20879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20879_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 2853981 - 2854202
Alignment:
| Q |
22 |
agactacatacaagcatgaaagcttaaaaaattgtcaatactaggaagtttcagtactaagatttatttattttcatatatacaaatcataaactgaaat |
121 |
Q |
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| T |
2853981 |
agactacatacaagcatgaaagcttaaaaaattgtcaatactaggaagtttcagtactaagatttatttattttcatatatacaaatcataaactaaaat |
2854080 |
T |
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| Q |
122 |
ttcttattcaaaatttgttgaaagatgcaaagggtgagacttacaatgcaagaatacaaaagtaccgttcacatgcatggacttgtaaaactattc-aag |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2854081 |
ttcttattcaaaatttgttgaaagatgcaaagggtgagacttacaatgcaagaatacaaaagtaccgttcacatgcatggacttgtaaaactattctaag |
2854180 |
T |
|
| Q |
221 |
tcttcacaaattatttcttacc |
242 |
Q |
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|||||||||||| ||||||||| |
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| T |
2854181 |
tcttcacaaattctttcttacc |
2854202 |
T |
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