View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2087_high_1 (Length: 829)
Name: NF2087_high_1
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2087_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 412 - 814
Target Start/End: Complemental strand, 24959518 - 24959124
Alignment:
| Q |
412 |
aaggaattcctacatttt-ctcgcaacatgaattaattgcaacatcgagcctctttcaaaaggtgaatgtttttctgacctccttatttgctcaacctat |
510 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24959518 |
aaggaattcctacatttttctcgcaacatgaattaattgcaacatcgagcctcttctaaaaggtgaatgtttttttgacctccttatttgctcaacctat |
24959419 |
T |
|
| Q |
511 |
tgggacgtaactcccgatagacnnnnnnnnnnncttttccttaaaggtaaattaggagttaaatcctgatggggctattgaaggatttgtaggccttagt |
610 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
24959418 |
tgggacgtaactcccgatagactttttttttt--ttttgcttaaaggtaaattaggagttaaatcccgatggagctattgaaggatttgtaggccttagt |
24959321 |
T |
|
| Q |
611 |
tgtgggtggaccgtggtaggtccaaggagtgaagaatgtggccctatgatttaggaataacgattaaaaaacaaattttcgatccacctttatatgttta |
710 |
Q |
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| T |
24959320 |
tgtgggtggactgtggtaggtccaag---tgaagaatgtggcgctatgatttaggaataacaatgaaaaaacaatttttcgatccacctttatatgttta |
24959224 |
T |
|
| Q |
711 |
aatttatcaaaatatatacactatccaagatgagtttaagatgctctcttgtgctttttgagggaagatcgagaaattatataatggaaattttcttgtt |
810 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24959223 |
aatttatcaaaata----cactatccaagacgagtttaagatgctctcttgtactttttgagggaagatcgagaaattatataatggaatttttcttgtt |
24959128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 24959915 - 24959594
Alignment:
| Q |
18 |
aaaaaggctccgtatattaaaatttgttttaaaactcacctaaaaataaaaattattggaccggccttgattacatctgtagggagtgttcatttagcct |
117 |
Q |
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| T |
24959915 |
aaaaaggctccgtatattaaaatttgttttagaactcacctaaaaataaaagttattggaccggccctaattacatctctaaggagtgtccatttagcct |
24959816 |
T |
|
| Q |
118 |
tcattacactatgctagcaagacactctctaactcatattccatgaaataattgaatgaaatgagaaaccatgaaaaaatggttaatcattgattccann |
217 |
Q |
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| T |
24959815 |
tcattacactatactagcaagacactctctaactcatattccatgaaataatggaatgaaatgagaaaccatgaaaaaatggttaatcattgattccatt |
24959716 |
T |
|
| Q |
218 |
nnnnnattatcaatcattaacaaaatcttaaagaaagaatatcactactgaggtctgggggtgtttctgtcatccttactgcaaattgattcaaaaactt |
317 |
Q |
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| T |
24959715 |
tttttattatcaatcattaacaaaatcttaaagaaagaatatcactactgaggtctgggggtgtttctgtcatccttactgcaaattgattcaaaaactt |
24959616 |
T |
|
| Q |
318 |
tctaatagaaattggtctcaca |
339 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
24959615 |
tctaatagaaattggtctcaca |
24959594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 577 - 726
Target Start/End: Complemental strand, 24954797 - 24954648
Alignment:
| Q |
577 |
tgatggggctattgaaggatttgtaggccttagttgtgggtggaccgtggtaggtccaaggagtgaagaatgtggccctatgatttaggaataacgatta |
676 |
Q |
| |
|
||||||||||||||||| |||| |||||| | |||||| |||||||||| ||||| |||||||||||||||| || |||||||||||||||||| || | |
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| T |
24954797 |
tgatggggctattgaagaatttccaggcctaaattgtggatggaccgtggcaggtctaaggagtgaagaatgttgcactatgatttaggaataacaatga |
24954698 |
T |
|
| Q |
677 |
aaaaacaaattttcgatccacctttatatgtttaaatttatcaaaatata |
726 |
Q |
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|||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
24954697 |
aaaaacaatttttcaatccatctttatatgtttaaatttatcaaaatata |
24954648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 342 - 531
Target Start/End: Complemental strand, 24955059 - 24954869
Alignment:
| Q |
342 |
gaaaaagtgatggtcctgattttaattgtaatactttgtttggagaaattttgtataaaatatggtttataaggaattcctacattttctcgcaacatg- |
440 |
Q |
| |
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|||||||||||||| ||||||| || | | ||||||| |||||| ||||| ||||||||||||||||| |||||||||||| |||||| |||||||| |
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| T |
24955059 |
gaaaaagtgatggtggtgattttgatggcagtactttgattggagtaattt-gtataaaatatggtttaataggaattcctacgttttcttgcaacatga |
24954961 |
T |
|
| Q |
441 |
aattaattgcaacatcgagcctctttcaaaaggtgaatg-tttttctgacctccttatttgctcaacctattgggacgtaactcccgataga |
531 |
Q |
| |
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|| ||||||||||| |||||| ||||||||||||||||| ||| || |||||||||||||||| ||||||||| |||| || ||||||| |
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| T |
24954960 |
aagtaattgcaacaacgagcccctttcaaaaggtgaatgcactttttggtctccttatttgctcaatctattgggatgtaattcacgataga |
24954869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 116 - 339
Target Start/End: Complemental strand, 24955318 - 24955098
Alignment:
| Q |
116 |
cttcattacactatgctagcaagacactctctaactca--tattccatgaaataattgaatgaaatgagaaaccatgaaaaaatggttaatc-attgatt |
212 |
Q |
| |
|
|||| |||||||||||||| || ||||||||| |||| ||| ||| |||||||| |||||||||| ||||| |||||||||||||||||| ||||||| |
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| T |
24955318 |
cttcgttacactatgctaggaacgcactctctacctcacatatcccaagaaataatggaatgaaatgtgaaactatgaaaaaatggttaatccattgatt |
24955219 |
T |
|
| Q |
213 |
ccannnnnnnattat--caatcattaacaaaatcttaaagaaagaatatcactactgaggtctgggggtgtttctgtcatccttactgcaaattgattca |
310 |
Q |
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||| || | ||||||||||| || ||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||| |
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| T |
24955218 |
ccatcttttctttttaccaatcattaactccatgttaaagaaataatattactacta--------gggtgtttctttcatccttactgcaaattgattca |
24955127 |
T |
|
| Q |
311 |
aaaactttctaatagaaattggtctcaca |
339 |
Q |
| |
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|||||||||| ||| |||||||||||||| |
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| T |
24955126 |
aaaactttctgataaaaattggtctcaca |
24955098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 17410044 - 17410099
Alignment:
| Q |
30 |
tatattaaaatttgttttaaaactcacctaaaaataaaaattattggaccggcctt |
85 |
Q |
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|||||||||||||||| || | ||||||||||||||||||||||||||||| |||| |
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| T |
17410044 |
tatattaaaatttgttatagatctcacctaaaaataaaaattattggaccgacctt |
17410099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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