View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2087_high_10 (Length: 422)
Name: NF2087_high_10
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2087_high_10 |
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| [»] chr5 (5 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 32645166 - 32645587
Alignment:
| Q |
1 |
ttcaaacatattagataataatcctcagttatgatgttttattagcaaattnnnnnnnncgcaatgatcaagttaagtaccttgcttttcactagcgctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32645166 |
ttcaaacatattagataataatcctcagttatgatgttttattagcaaattgaaaaaaacgcaatgatcaagttaagtaccttgcttttcactagcgctg |
32645265 |
T |
|
| Q |
101 |
gaagttgtttctcatcacctataagaatgcaacgttgaagacccgggaactgtaacggaatcatggattcgcattctttcaactgtgctgcttcatcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
32645266 |
gaagttgtttctcatcacctataagaatgcaatgttgaagacccgggagctgtaacggaatcatggattcacattctttcagctgtgctgcttcatcaat |
32645365 |
T |
|
| Q |
201 |
cactaaaaatttcactggactcatctcttctgagtaaagtttgatcgaacttgatacagtacacaaaattagactagcatttgacaagcaaaacttttcc |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32645366 |
cactaaaaatttcactggactcgtctcttctgagtaaagtttgatagaacttgatacagtacacaaaattagactagcatctgacaagcaaaacttttcc |
32645465 |
T |
|
| Q |
301 |
acttgatgtctcactttaaattcaggaagcgaaattgagttggaaaggaaacttagtatgcgaaggcaatcatttctttccaaacttgatggtccaaagc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32645466 |
acttgatgtctcactttaaattcaggaagcgaaattgagttggaaaggaaacttagtatgcgaaggcaatcatttctttccaaacttgatggtccaaagc |
32645565 |
T |
|
| Q |
401 |
aagcaggaatgctttcttcttc |
422 |
Q |
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|||||||||||||||||||||| |
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| T |
32645566 |
aagcaggaatgctttcttcttc |
32645587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 187 - 422
Target Start/End: Complemental strand, 32569048 - 32568813
Alignment:
| Q |
187 |
gctgcttcatcaatcactaaaaatttcactggactcatctcttctgagtaaagtttgatcgaacttgatacagtacacaaaattagactagcatttgaca |
286 |
Q |
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|||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
32569048 |
gctgcttcatcaataactaaaaatttcaccggactcttctcttctgagtaaagtttgatagagcttgatacagtacacaaaattagactagcatttgaca |
32568949 |
T |
|
| Q |
287 |
agcaaaacttttccacttgatgtctcactttaaattcaggaagcgaaattgagttggaaaggaaacttagtatgcgaaggcaatcatttctttccaaact |
386 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
32568948 |
agcaaaacttttccacttgatgtctcactttaaaatcaggaagcgaaattgacttggaaaggaaacttagtatgtgaaggcaatcctttctttccaaact |
32568849 |
T |
|
| Q |
387 |
tgatggtccaaagcaagcaggaatgctttcttcttc |
422 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32568848 |
tgatggtccaaagcaagcaggaatgctttcttcttc |
32568813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 67 - 358
Target Start/End: Original strand, 32613943 - 32614234
Alignment:
| Q |
67 |
atcaagttaagtaccttgcttttcactagcgctggaagttgtttctcatcacctataagaatgcaacgttgaagacccgggaactgtaacggaatcatgg |
166 |
Q |
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||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| | ||||||||||||| | ||| ||||||||||||| |
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| T |
32613943 |
atcaagttaagtaccttgcttttgactaatgccggaagttgtttctcatcacctataagaatgccatgttgaagacccggtagctgcaacggaatcatgg |
32614042 |
T |
|
| Q |
167 |
attcgcattctttcaactgtgctgcttcatcaatcactaaaaatttcactggactcatctcttctgagtaaagtttgatcgaacttgatacagtacacaa |
266 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||| || ||| |||||| ||| ||||| || ||||| || || |||||||| |
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| T |
32614043 |
attcacattctttcagctgtgctgcttcatcaatcactaaaaatttcacgtgagccattccttctgtgtacagtttaatagaactagacactgtacacaa |
32614142 |
T |
|
| Q |
267 |
aattagactagcatttgacaagcaaaacttttccacttgatgtctcactttaaattcaggaagcgaaattgagttggaaaggaaacttagta |
358 |
Q |
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||| |||| ||||| ||||||||||||||||| | ||| ||| | || | ||| |||||| ||||||| |||||||| |||||||||| |
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| T |
32614143 |
aatcagacatgcattagacaagcaaaacttttctatgtgacctcttccattgagttctggaagcaaaattgaattggaaagcaaacttagta |
32614234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 293
Target Start/End: Original strand, 32525289 - 32525432
Alignment:
| Q |
150 |
ctgtaacggaatcatggattcgcattctttcaactgtgctgcttcatcaatcactaaaaatttcactggactcatctcttctgagtaaagtttgatcgaa |
249 |
Q |
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|||||| |||||| | ||||| |||||||| | |||||| |||||||| || |||||||||| | ||| |||| ||| ||| ||| ||||| | ||| |
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| T |
32525289 |
ctgtaatggaatcgttgattcacattcttttagctgtgccgcttcatcgattactaaaaattgaattgggctcacctcggctgtgtatagtttaacagaa |
32525388 |
T |
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| Q |
250 |
cttgatacagtacacaaaattagactagcatttgacaagcaaaa |
293 |
Q |
| |
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|||||| ||||||| || ||||| | |||||||||||||||||| |
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| T |
32525389 |
cttgatgcagtacagaagattaggcaagcatttgacaagcaaaa |
32525432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 32531793 - 32531849
Alignment:
| Q |
250 |
cttgatacagtacacaaaattagactagcatttgacaagcaaaacttttccacttga |
306 |
Q |
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||||||||||| ||||||| ||||| ||||| ||||||||||| |||||||||||| |
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| T |
32531793 |
cttgatacagtgcacaaaactagacaagcatacgacaagcaaaatttttccacttga |
32531849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 16071 - 16029
Alignment:
| Q |
166 |
gattcgcattctttcaactgtgctgcttcatcaatcactaaaa |
208 |
Q |
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||||| |||||||||| |||||| ||||||||||||||||||| |
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| T |
16071 |
gattcacattctttcagctgtgcagcttcatcaatcactaaaa |
16029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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