View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2087_high_2 (Length: 662)

Name: NF2087_high_2
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2087_high_2
NF2087_high_2
[»] chr4 (6 HSPs)
chr4 (179-644)||(28110915-28111380)
chr4 (9-178)||(40383045-40383213)
chr4 (312-627)||(33131359-33131674)
chr4 (285-542)||(21867286-21867543)
chr4 (285-542)||(21923147-21923404)
chr4 (364-436)||(15559086-15559158)
[»] chr3 (2 HSPs)
chr3 (179-644)||(24836869-24837334)
chr3 (197-265)||(30871450-30871518)
[»] chr2 (1 HSPs)
chr2 (179-644)||(34326094-34326558)
[»] chr8 (1 HSPs)
chr8 (179-388)||(4028425-4028634)
[»] chr7 (1 HSPs)
chr7 (189-234)||(35052330-35052375)
[»] chr1 (1 HSPs)
chr1 (38-88)||(22793016-22793064)


Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 179 - 644
Target Start/End: Original strand, 28110915 - 28111380
Alignment:
Q  179 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28110915 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccacctaaaaggccca 28111014  T
Q  279 aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatg 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28111015 aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatg 28111114  T
Q  379 ctaacaccttaatatcctccaccatgtcgtcaataccaaaaggagaatttttaaaaataaagtcatttctaactctccagatggtccaaatcgctgtgtg 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28111115 ctaacaccttaatatcctccaccatgtcgtcaataccaaaaggagaatttttaaaaataaagtcatttctaactctccagatggtccaaatcgctgcgtg 28111214  T
Q  479 ccagattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaaagatgaaacaggtccggtggtggataataattgaaa 578  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28111215 ccggattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaaagatgaaacaggtccggtggtggataataattgaaa 28111314  T
Q  579 ccgagccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagatgatcc 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28111315 ccgagccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagatgatcc 28111380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 40383045 - 40383213
Alignment:
Q  9 gtagcatagggagtatcgtctgtttatggtttaataattcaagttatcactaatataggaagcatctttgttatttagcataagaagtatcgttttatgt 108  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  40383045 gtagcatagggagtatcatctgtttatagtttaataattcaagttatcactaacataggaagcatcttt-ttatttagcataagaagtatcgttttatgt 40383143  T
Q  109 accttttgtgtataactattattaatttannnnnnngaatatataaatgtatcaaatactctctccgtct 178  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  40383144 accttttgtgtataactattattaatttatttttttgaatatataaatgtatcaaatactctctccgtct 40383213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 312 - 627
Target Start/End: Original strand, 33131359 - 33131674
Alignment:
Q  312 ggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatgctaacaccttaatatcctccaccatgtcgtcaa 411  Q
    |||||||| |||||||| | | | |||||||||||||| ||||| |||||||| ||||||| ||| ||||||||||||||  |||||||||  || ||||    
T  33131359 ggattccatgtccattctttaaataaacaaaccggcaaattcaagcgactcaatacccaccgccaagctaacaccttaattgcctccaccacttcatcaa 33131458  T
Q  412 taccaaaaggagaatttttaaaaataaagtcatttctaactctccagatggtccaaatcgctgtgtgccagattatccgataccccttctgaatcttctt 511  Q
     |||  |   ||| || ||||| ||||| |||||||||| | ||||||| ||||||| ||| |  ||||| || |||||||| ||||||  || ||||||    
T  33131459 caccgcagacagagttattaaagataaaatcatttctaattttccagatagtccaaaccgccgcatgccaaataatccgataacccttcctaaccttctt 33131558  T
Q  512 attcctagacaactcatcccaccacttccaaagatgaaacaggtccggtggtggataataattgaaaccgagccatgacagaagcttggtccaaactgct 611  Q
    |||||||| | | |||| |||||||| |||| |||  || || ||||||||||||| ||| |  ||||| ||||||  |||||| || ||||||| ||||    
T  33131559 attcctagccgagtcattccaccactgccaatgatagaaaagatccggtggtggatgatagtcaaaaccaagccatctcagaagattagtccaaattgct 33131658  T
Q  612 gttgccgtaacacaat 627  Q
    |||||||| |||||||    
T  33131659 gttgccgtcacacaat 33131674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 285 - 542
Target Start/End: Original strand, 21867286 - 21867543
Alignment:
Q  285 caccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatgctaaca 384  Q
    ||||||||||||| || |||  |||| || ||||| |||||||| ||  ||| |||  ||||||| || |||||  |||  ||| ||||||| |||||||    
T  21867286 caccattaccgcagcagacagtcttgcgggttccaagtccattcgtagaacatacacgccggcaagtttaaacggttcagcacctacctccaagctaaca 21867385  T
Q  385 ccttaatatcctccaccatgtcgtcaataccaaaaggagaatttttaaaaataaagtcatttctaactctccagatggtccaaatcgctgtgtgccagat 484  Q
    |||| ||| |||| ||||  || | |||  || ||| ||| || || ||||| |||||||||||||||| ||| || |||||||| || |  ||||||||    
T  21867386 ccttgatagcctcgaccacttctttaatcgcacaagaagagttattgaaaatcaagtcatttctaactcgccaaattgtccaaatagccgcatgccagat 21867485  T
Q  485 tatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaa 542  Q
     ||||  ||||||||  |||||||||||||||  |||||||||| |||||||||||||    
T  21867486 aatccagtaccccttacgaatcttcttattccccgacaactcattccaccacttccaa 21867543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 285 - 542
Target Start/End: Original strand, 21923147 - 21923404
Alignment:
Q  285 caccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatgctaaca 384  Q
    ||||||||||||| || |||  |||| || ||||| |||||||| ||  ||| |||  ||||||| || |||||  |||  ||| ||||||| |||||||    
T  21923147 caccattaccgcagcagacagtcttgcgggttccaagtccattcgtagaacatacacgccggcaagtttaaacggttcagcacctacctccaagctaaca 21923246  T
Q  385 ccttaatatcctccaccatgtcgtcaataccaaaaggagaatttttaaaaataaagtcatttctaactctccagatggtccaaatcgctgtgtgccagat 484  Q
    |||| ||| |||| ||||  || | |||  || ||| ||| || || ||||| |||||||||||||||| ||| || |||||||| || |  ||||||||    
T  21923247 ccttgatagcctcgaccacttctttaatcgcacaagaagagttattgaaaatcaagtcatttctaactcgccaaattgtccaaatagccgcatgccagat 21923346  T
Q  485 tatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaa 542  Q
     ||||  ||||||||  |||||||||||||||  |||||||||| |||||||||||||    
T  21923347 aatccagtaccccttacgaatcttcttattccccgacaactcattccaccacttccaa 21923404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 364 - 436
Target Start/End: Complemental strand, 15559158 - 15559086
Alignment:
Q  364 aaacccacctccatgctaacaccttaatatcctccaccatgtcgtcaataccaaaaggagaatttttaaaaat 436  Q
    ||||||||||||| ||||||| |||||| ||||||||||| |||||||| |||||||||||||| ||||||||    
T  15559158 aaacccacctccacgctaacaacttaatgtcctccaccatctcgtcaatgccaaaaggagaattattaaaaat 15559086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 179 - 644
Target Start/End: Complemental strand, 24837334 - 24836869
Alignment:
Q  179 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24837334 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccacctaaaaggccca 24837235  T
Q  279 aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatg 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24837234 aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccaag 24837135  T
Q  379 ctaacaccttaatatcctccaccatgtcgtcaataccaaaaggagaatttttaaaaataaagtcatttctaactctccagatggtccaaatcgctgtgtg 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24837134 ctaacaccttaatatcctccaccatgtcgtcaataccaaaaggagaatttttaaaaataaagtcatttctaactctccagatggtccaaatcgctgcgtg 24837035  T
Q  479 ccagattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaaagatgaaacaggtccggtggtggataataattgaaa 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24837034 ccagattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaaagatgaaacaggtccggtggtcgataataattgaaa 24836935  T
Q  579 ccgagccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagatgatcc 644  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24836934 ccgatccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagatgatcc 24836869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 30871518 - 30871450
Alignment:
Q  197 agcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgccca 265  Q
    ||||| |||||||||||||| |||  | |||||||||| | ||||||||||| | ||||||| ||||||    
T  30871518 agcaacgaggctgtcatatattccctgtcaaaacagcaaaacagcagcatacaacagcctcaccgccca 30871450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 179 - 644
Target Start/End: Complemental strand, 34326558 - 34326094
Alignment:
Q  179 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca 278  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| ||| | |||| |||||||||||||||||| || | ||||  ||| || |||     
T  34326558 ggtgcaaagaagcaggacagcagcgaggctgtcatatactcctagccgaaaaatcagaacagcagcataccaaagccgcagcacccacgtaacagacccc 34326459  T
Q  279 aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatg 378  Q
    |||| ||||||||||||||||| |||| ||||||||||||| |||||||  || ||||||||||||||||| ||||| || |||||||||||||||||||    
T  34326458 aaaaaccaccattaccgcaccagacactcttgtggattccaagtccatttgtagtacaaacaaaccggcaa-ttcaagcggctcaaaacccacctccatg 34326360  T
Q  379 ctaacaccttaatatcctccaccatgtcgtcaataccaaaaggagaatttttaaaaataaagtcatttctaactctccagatggtccaaatcgctgtgtg 478  Q
    ||||||||||||| ||||||||||| || ||||| | |||||||||||| || ||||| |||||||||||||||||||| || ||||||| ||| | |||    
T  34326359 ctaacaccttaatgtcctccaccatctcatcaatgcgaaaaggagaattgttgaaaatgaagtcatttctaactctccaaatagtccaaaccgcggcgtg 34326260  T
Q  479 ccagattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaaagatgaaacaggtccggtggtggataataattgaaa 578  Q
    ||| || |||||||| ||||||  ||||||||||||||| |||||||||||| |||||||||||||||||||||  |||||||| |||| | ||||||||    
T  34326259 ccaaataatccgataacccttccaaatcttcttattccttgacaactcatccaaccacttccaaagatgaaacaaatccggtggcggatgaaaattgaaa 34326160  T
Q  579 ccgagccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagatgatcc 644  Q
    |||||||| |||||||||||||| ||||||||||||||| ||| ||| ||||| ||||||||||||    
T  34326159 ccgagccacgacagaagcttggttcaaactgctgttgccataatacagttgaggaaaagatgatcc 34326094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 179 - 388
Target Start/End: Complemental strand, 4028634 - 4028425
Alignment:
Q  179 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca 278  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||| || | |||   ||| || |||     
T  4028634 ggtgcaaagaagcaggacagcagtgaggccgtcatatactcctagccaaaaaagcagaacagcagcataccaaagccgcagcacccgcataacagacccc 4028535  T
Q  279 aaaatccaccattaccgcaccaaacacgcttgtggattccacgtccattcataatacaaacaaaccggcaacttcaaacgactcaaaacccacctccatg 378  Q
    |||| ||||||||||||||||| |||| |||| |||||||| |||||||| || ||||||||||||||||| ||||| || ||||||||||| |||||||    
T  4028534 aaaaaccaccattaccgcaccagacactcttgcggattccaagtccattcgtagtacaaacaaaccggcaaattcaagcggctcaaaacccatctccatg 4028435  T
Q  379 ctaacacctt 388  Q
    ||||||||||    
T  4028434 ctaacacctt 4028425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 35052330 - 35052375
Alignment:
Q  189 agcaggacagcaatgaggctgtcatatactcctagccaaaacagca 234  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  35052330 agcaggacaacaatgaggctgtcatatactcgtagccaaaacagca 35052375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 22793016 - 22793064
Alignment:
Q  38 tttaataattcaagttatcactaatataggaagcatctttgttatttagca 88  Q
    |||||||||||||||| |||  || ||||||||||||||||||||||||||    
T  22793016 tttaataattcaagttttca--aacataggaagcatctttgttatttagca 22793064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University