View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2087_high_20 (Length: 250)
Name: NF2087_high_20
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2087_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 16153942 - 16153708
Alignment:
| Q |
1 |
acctgaagccttgtttgaatttagaacaaaggtatatgaaaataaaaccctaaaatctctcaagttgttttcttgcaattttccggaaaatgagttgatg |
100 |
Q |
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| T |
16153942 |
acctgaagccttgtttgaattgagaacaaaggtatatgaaaataaaaccctaaaatctctcaagttgttttcttgcaattttccggaaaatgagttgatg |
16153843 |
T |
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| Q |
101 |
aagttccatgcactcaaagaagtttctttaggttggatggaattgaaaaacaacgcaatcgaaactcttttatcgaattgcaagatgattgagattttaa |
200 |
Q |
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| T |
16153842 |
aagttccatgcactcaaagaagtttctttaggttggatggaattgaaaaacaacgcaatcgaaactcttttatccaattgcaagatgattgagattttaa |
16153743 |
T |
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| Q |
201 |
acatnnnnnnntgttggacatggaatagaattgat |
235 |
Q |
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| T |
16153742 |
acataaaaaaatgttggacatggaatagaattgat |
16153708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 18463045 - 18463194
Alignment:
| Q |
1 |
acctgaagccttgtttgaatttagaacaaaggtatatgaaaataaaaccctaaaatctctcaagttgttttcttgcaattttccggaaaatgagttgatg |
100 |
Q |
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|||| |||| ||||||||||| |||| |||||||| | ||||||| || |||||||||| ||| ||||||| | |||| |||| ||||||| |
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| T |
18463045 |
acctaaagctttgtttgaattgccaacagaggtatataagcataaaactttagaatctctcaaattggtttcttgtagttttgttgaaaccaagttgatc |
18463144 |
T |
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| Q |
101 |
aagttccatgcactcaaagaagtttctttaggttggatggaattgaaaaa |
150 |
Q |
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| T |
18463145 |
aagttacatgctctcaaagaagtttattttgcttggatggaattgaaaaa |
18463194 |
T |
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