View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2087_high_23 (Length: 249)
Name: NF2087_high_23
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2087_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 50768669 - 50768897
Alignment:
| Q |
4 |
ctatagattcaaaaagaatcatgtgctctcaacggtatcttgataaagaaagacatagggggataaatataattgtacgaacaaagtaaggtacaaataa |
103 |
Q |
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| T |
50768669 |
ctatagattcaaaaagaatcatgtgctctcaacggtagcttgataaagaaagacataggggtataaatataattgtacgaacaaagtaaggtacaaataa |
50768768 |
T |
|
| Q |
104 |
ttaagctaaagcaaggaaactgtatcttcttggatcattatgaaactataacaaacaaaataatgtaaccttctttttgttttgatcaagacaactaaat |
203 |
Q |
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||||||||| ||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50768769 |
ttaagctaatgcaaggaaattgtacctttttggatcattatgaaaccataacaaacaaaataatgtaaccttctttttgttttgatcaagacaactaaat |
50768868 |
T |
|
| Q |
204 |
attccccacacacgttatgttcctcagct |
232 |
Q |
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||||||||||||| ||||||||||||||| |
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| T |
50768869 |
attccccacacacattatgttcctcagct |
50768897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 26824488 - 26824260
Alignment:
| Q |
4 |
ctatagattcaaaaagaatcatgtgctctcaacggtatcttgataaagaaagacatagggggataaatataattgtacgaacaaagtaaggtacaaataa |
103 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26824488 |
ctatagattcaaaaagaatcatgtgctctcaacggtagcttgataaagaaagacataggggtataaatataattgtacgaacaaagtaaggtacaaataa |
26824389 |
T |
|
| Q |
104 |
ttaagctaaagcaaggaaactgtatcttcttggatcattatgaaactataacaaacaaaataatgtaaccttctttttgttttgatcaagacaactaaat |
203 |
Q |
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||||||||| ||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26824388 |
ttaagctaatgcaaggaaattgtacctttttggatcattatgaaaccataacaaacaaaataatgtaaccttctttttgttttgatcaagacaactaaat |
26824289 |
T |
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| Q |
204 |
attccccacacacgttatgttcctcagct |
232 |
Q |
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||||||||||||| ||||||||||||||| |
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| T |
26824288 |
attccccacacacattatgttcctcagct |
26824260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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