View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2087_high_26 (Length: 215)
Name: NF2087_high_26
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2087_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 22858161 - 22857980
Alignment:
| Q |
17 |
aaagagaggtataggaaacttatgaaggatgtgtcgaagatggctggaggattttcgcttgcggatttgtatccttcaattggaattcttaaagttctta |
116 |
Q |
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| T |
22858161 |
aaagagaggtataggaaacttatgaaggatgtgtcgaagatggctggaggattttcgcttgcggatttgtatccttcaattggaattcttaaagttctta |
22858062 |
T |
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| Q |
117 |
caggattaagacaaggaattgagaagcttcatagggaaatggatgagatactagagaatgttgtaagaagccatagagagaa |
198 |
Q |
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| T |
22858061 |
caggattaagacaaggaattgagaagcttcatagggaaatggatgagatactagagaatgttgtaagaagccatagagagaa |
22857980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 22902142 - 22902309
Alignment:
| Q |
26 |
tataggaaacttatgaaggatgtgtcgaagatggctggaggattttcgcttgcggatttgtatccttcaattggaattcttaaagttcttacaggattaa |
125 |
Q |
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| T |
22902142 |
tataggaaaattataaaggatgttttaaaggtggctggagggttttcgcttgcggatttgtatccttcaattagaattcttcaagttcttacaggattaa |
22902241 |
T |
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| Q |
126 |
gacaaggaattgagaagcttcatagggaaatggatgagatactagagaatgttgtaagaagccataga |
193 |
Q |
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| T |
22902242 |
ggcaaagaattgagaagctccatggtgaaacggataagatactagagaacattgtaagaagtcataga |
22902309 |
T |
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