View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2087_high_5 (Length: 539)
Name: NF2087_high_5
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2087_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 9 - 522
Target Start/End: Complemental strand, 2287875 - 2287362
Alignment:
| Q |
9 |
ttattctcctaacaaaatatatataaactgatcaaaaggctaagaacccataagtaatattttgatattagcctcacacccataaaacaggctcaataat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2287875 |
ttattctcctaacaaaatatatataaactgatcaaaaggctaagaacccataagtaatattttgatattagcctcacacccataaaacaggctcaataat |
2287776 |
T |
|
| Q |
109 |
aagttaataaccaccttagagaggtacttaaccccacccatttcttgaaaattgcacccctctggatttacaaattcggacggaaaaataccattttttc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2287775 |
aagttaataaccaccttagagaggtacttaaccccacccatttcttgaaaattgcacccctctggatttacaaattcggacggaaaaataccattttttc |
2287676 |
T |
|
| Q |
209 |
tggtgtctagataggcaagcctgaacgacaaaatgatattttgtccgccagatcaataaatccatacagaagcgtgtttaaaaattcatagggtaggaaa |
308 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2287675 |
tggtgtctagataggcaagcccgaacgacaaaatgatattttgtccgccagatgaataaatccatacagaagcgtgtttaaaaattcatagggtaggaaa |
2287576 |
T |
|
| Q |
309 |
aggaactctcatcgccttatggtttacgcacgctaagcaacttgacatcatcaataacaggaccacaaagagaagaaagatcatcacttctcatactata |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2287575 |
aggaactctcatcgccttatggtttacgcacgctaagcaacttgacatcatcaataacaggaccacaaagagaagaaagatcatcacttctcatactata |
2287476 |
T |
|
| Q |
409 |
aaaagtactaagaaacatcacccttgttcttgtcccaacagctacaaacttaagcgccgcacgtttgaatccacctttacctttggatgtataaggtacc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2287475 |
aaaagtactaagaaacatcacccttgttcttgtcccaacagctacaaacttaagcgccgcacgtttgaatccacctttacctttggatgtataaggtacc |
2287376 |
T |
|
| Q |
509 |
ttaattgtgtcttt |
522 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2287375 |
ttaattgtgtcttt |
2287362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 44409861 - 44409820
Alignment:
| Q |
341 |
ctaagcaacttgacatcatcaataacaggaccacaaagagaa |
382 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
44409861 |
ctaagcaattttacatcatcaataacaggtccacaaagagaa |
44409820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University