View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2087_high_6 (Length: 470)
Name: NF2087_high_6
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2087_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 52242788 - 52242325
Alignment:
| Q |
1 |
cagttcagttctgttctgttctgttatgttccattcctcgctataacaataacaatttcccgccagattttgaatggagagattttatagttattctgaa |
100 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52242788 |
cagttcagttcagttctgttctgttccattccattcctcgctataacaataacaatttcccgccagattttgaatggagagattttatagttattctgaa |
52242689 |
T |
|
| Q |
101 |
caacgagagggtattcagttaggatatgatgaagatgagagtagtaacaatccgagcacatcacagaggaaatcagacgttgattttaatgatgtgtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52242688 |
caacgagagggtattcagttaggatatgatgaagatgagagtagtaacaatccgagcacatcacagaggaaatcagacgttgattttaatgatgtgtttg |
52242589 |
T |
|
| Q |
201 |
ggggaccgccgcggaggaggtcatcggtgagtggaggagaggaaggtgaaacgggttggtgtagttggcctcctccgcctgagagcgagaaaccggtgtt |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52242588 |
ggggaccaccgcggaggaggtcatcggtgagtggaggagaggaaggtgaaacgggttggtgtagttggcctcctccgcctgagagcgagaaaccagtgtt |
52242489 |
T |
|
| Q |
301 |
tggtgaggatagtggagtta-gaggagaagaaaaggaaaagatttctttgatgatatatttggaggagaagattcacagtctcaaactccaagtgggtgt |
399 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52242488 |
tggtgaggatagtggagctaggaggagaagaaaaggaaaagatttttttgatgatatatttggaggagaagattcacagtctcaaactccaagtgggtgt |
52242389 |
T |
|
| Q |
400 |
tcaacaccaaagagacgtgatggtgctgctttcagtcctgctcttcgaccacttgcttcatctc |
463 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52242388 |
tcaacaccaaagagacgtgatggtgctgctttcagtcctgctcttcgaccacttgcttcttctc |
52242325 |
T |
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