View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2087_high_7 (Length: 466)

Name: NF2087_high_7
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2087_high_7
NF2087_high_7
[»] chr4 (9 HSPs)
chr4 (16-460)||(25038847-25039291)
chr4 (166-348)||(25017806-25017990)
chr4 (32-132)||(25018061-25018161)
chr4 (29-132)||(4600717-4600820)
chr4 (29-132)||(4624855-4624958)
chr4 (176-248)||(4624732-4624804)
chr4 (176-267)||(4600386-4600477)
chr4 (226-282)||(25189515-25189571)
chr4 (74-126)||(25189714-25189766)
[»] chr2 (5 HSPs)
chr2 (39-132)||(18803706-18803799)
chr2 (166-248)||(18803840-18803922)
chr2 (61-109)||(42167706-42167754)
chr2 (43-109)||(42157211-42157277)
chr2 (43-108)||(42290147-42290212)
[»] chr6 (1 HSPs)
chr6 (61-108)||(29460418-29460465)
[»] scaffold0108 (1 HSPs)
scaffold0108 (61-125)||(15862-15926)


Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Complemental strand, 25039291 - 25038847
Alignment:
Q  16 actaattaacagttctaacaaatatgcagaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaactactt 115  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25039291 actaattaacagttttaacaaatatgcagaaggaaaagtaagtgaaggtataaaccaagaaggaatcaaatattacaacaacctgatcaatgaactactt 25039192  T
Q  116 gataatggtaatgcatattcatgaaattcataannnnnnnactaaatgatataatcatggtaatataaattgatggacttattgatccagatctggtacc 215  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  25039191 gataatggtaatgcatattcatgaaattcataatttttttactaaatgatataatcatagtaatataaattgatggacttattgatccaggtctggtacc 25039092  T
Q  216 atttgtgacccttttccattgggatcttccccaagttttacaagacgagtacagcggtttcttaagccctaatattatgtaagttgcatggcgcaaattt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25039091 atttgtgacccttttccattgggatcttccccaagttttacaagacgagtacagcggtttcttaagccctaatattatgtaagttgcatggtgcaaattt 25038992  T
Q  316 tcattcaagcaataataatatatcgatggctacttatataaattgaatttttatttaacagcgttaatttatatgagcacgatccatgatagagctttat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25038991 tcattcaagcaataataatatatcgatggctacttatataaattgaatttttatttaacagcgttaatttatatgagcacgatccatgatagagctttat 25038892  T
Q  416 gaagtcgattgaaatatgtattttatatggtttcattgatgatgt 460  Q
    || ||||||||||||||||||||||||||||||||||| ||||||    
T  25038891 gacgtcgattgaaatatgtattttatatggtttcattgctgatgt 25038847  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 166 - 348
Target Start/End: Complemental strand, 25017990 - 25017806
Alignment:
Q  166 ataatcatggtaatataaattgatggacttattg--atccagatctggtaccatttgtgacccttttccattgggatcttccccaagttttacaagacga 263  Q
    ||||| || |||||||||||||||||| ||||||  ||  || |||||||||||||||||||||||| || ||||||||||||||||   ||||||||||    
T  25017990 ataataatagtaatataaattgatggaattattggtatataggtctggtaccatttgtgaccctttttcactgggatcttccccaagccctacaagacga 25017891  T
Q  264 gtacagcggtttcttaagccctaatattatgtaagttgcatggcgcaaattttcattcaagcaataataatatatcgatggctac 348  Q
    |||||| || |||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||    
T  25017890 gtacagtggcttcttaagcccttatattatgtaagttgcatgacacaaattttcattcaagcaataataataaatcgatcgctac 25017806  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 25018161 - 25018061
Alignment:
Q  32 aacaaatatgcagaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaactacttgataatggtaatgcat 131  Q
    ||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  25018161 aacaaatatgcagaaggaaaagtaagtgcgggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggtaatgcat 25018062  T
Q  132 a 132  Q
    |    
T  25018061 a 25018061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 4600820 - 4600717
Alignment:
Q  29 tctaacaaatatgcagaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaactacttgataatggtaatg 128  Q
    ||||||||||||||||| |||||| ||||||  ||||||||| |||||||||||| || ||||||||| |||||  |||| ||||||| ||||||||||     
T  4600820 tctaacaaatatgcagatggaaaactaagtggcggtataaaccaagaaggaatcagattttacaacaatctgattgatgagctacttgctaatggtaata 4600721  T
Q  129 cata 132  Q
    ||||    
T  4600720 cata 4600717  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 4624958 - 4624855
Alignment:
Q  29 tctaacaaatatgcagaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaactacttgataatggtaatg 128  Q
    ||||||||||||||||  |||||| ||||||| ||| ||||| ||| |||||||| || |||||| ||||||||| |||| ||||||| |||||||||||    
T  4624958 tctaacaaatatgcagctggaaaaataagtgacggtgtaaaccaagcaggaatcatattttacaagaacctgatctatgagctacttgctaatggtaatg 4624859  T
Q  129 cata 132  Q
    ||||    
T  4624858 cata 4624855  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 4624804 - 4624732
Alignment:
Q  176 taatataaattgatggacttattgatccagatctggtaccatttgtgacccttttccattgggatcttcccca 248  Q
    ||||||||||||||||| |||||||||||| ||   |||||| |||||||||||| |||||||||||||||||    
T  4624804 taatataaattgatggaattattgatccaggtcaaataccatatgtgaccctttttcattgggatcttcccca 4624732  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 267
Target Start/End: Complemental strand, 4600477 - 4600386
Alignment:
Q  176 taatataaattgatggacttattgatccagatctggtaccatttgtgacccttttccattgggatcttccccaagttttacaagacgagtac 267  Q
    ||||||||||||||||| |||||||||||| ||   |||||| ||| |||||||| ||||||||||| ||| |  | |||||||| ||||||    
T  4600477 taatataaattgatggaattattgatccaggtcaaataccatatgtaaccctttttcattgggatctgcccaacatcttacaagaggagtac 4600386  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 25189571 - 25189515
Alignment:
Q  226 cttttccattgggatcttccccaagttttacaagacgagtacagcggtttcttaagc 282  Q
    ||||| |||||||||||||||||||| ||| ||||||||||  | ||||||||||||    
T  25189571 ctttttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagc 25189515  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 25189766 - 25189714
Alignment:
Q  74 gaaggaatcaaatattacaacaacctgatcaatgaactacttgataatggtaa 126  Q
    |||||||||||||||||||||||||| ||||| |||||| | | |||||||||    
T  25189766 gaaggaatcaaatattacaacaacctcatcaacgaactattggctaatggtaa 25189714  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 18803706 - 18803799
Alignment:
Q  39 atgcagaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaactacttgataatggtaatgcata 132  Q
    |||||||||||||| | ||||  |||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||    
T  18803706 atgcagaaggaaaacttagtggcggtaaaaacaaagaaggaatcagattttacaacaacctgatcaatgagctacttgataatggtaatgcata 18803799  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 18803840 - 18803922
Alignment:
Q  166 ataatcatggtaatataaattgatggacttattgatccagatctggtaccatttgtgacccttttccattgggatcttcccca 248  Q
    |||||||| ||||||||||||||  || |||||||||||| ||| ||||||| |||||||||||| |||| |||| |||||||    
T  18803840 ataatcatagtaatataaattgactgagttattgatccaggtctagtaccatatgtgaccctttttcattcggattttcccca 18803922  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 42167754 - 42167706
Alignment:
Q  61 aggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaa 109  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  42167754 aggtataaaccaagaaggaatcaaatattacaacaacctcatcaatgaa 42167706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 42157277 - 42157211
Alignment:
Q  43 agaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaa 109  Q
    |||||||||| | | || |||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  42157277 agaaggaaaacttaatggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatgaa 42157211  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 42290147 - 42290212
Alignment:
Q  43 agaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatga 108  Q
    |||||||||| | | || |||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  42290147 agaaggaaaaattaatggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatga 42290212  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 29460465 - 29460418
Alignment:
Q  61 aggtataaacaaagaaggaatcaaatattacaacaacctgatcaatga 108  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  29460465 aggtataaacaaggaaggaatcaattattacaacaacctcatcaatga 29460418  T

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Target: scaffold0108 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 15862 - 15926
Alignment:
Q  61 aggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaactacttgataatggta 125  Q
    |||||||||||||||||| ||||| |  ||||||||  ||||||||||  ||||||| |||||||    
T  15862 aggtataaacaaagaaggcatcaacttctacaacaatttgatcaatgacttacttgaaaatggta 15926  T

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