View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2087_low_27 (Length: 246)
Name: NF2087_low_27
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2087_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 32645596 - 32645824
Alignment:
| Q |
1 |
ctacagtttgcttaaatttggcttgactcaaggaaatttccattgattttaacaagtcaagagcttggagcatattgttaactgaaattaaagattttgg |
100 |
Q |
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| T |
32645596 |
ctacagtttgcttaaatttggcttgactcaaggaaatttccattgattttaacaagtcaagagcttggagcatattgttaactgaaattaaagattttgg |
32645695 |
T |
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| Q |
101 |
catgtgggtgcataacgtatgtatcaagaactttagcttctcacttaattctccaaatctctgcttcacaaattgctctatggtcatgatactttggtat |
200 |
Q |
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| T |
32645696 |
catgtgggtgcataacgtatgtatcaagaactttagcttctcacttaattctccaaatctctgcttcacaaattgctccatggtcatgatactttggtat |
32645795 |
T |
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| Q |
201 |
agctctataatctctttccttgctctctt |
229 |
Q |
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| T |
32645796 |
agctccataatctctttccttgctctctt |
32645824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 32568802 - 32568576
Alignment:
| Q |
3 |
acagtttgcttaaatttggcttgactcaaggaaatttccattgattttaacaagtcaagagcttggagcatattgttaactgaaattaaagattttggca |
102 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
32568802 |
acagcttgcttaaatttggcttgactcaaggaaatttccagtgattttaacgagtcaagagcttggagaatattgttcactgaaatgaaagattttggca |
32568703 |
T |
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| Q |
103 |
tgtgggtgcataacgtatgtatcaagaactttagcttctcacttaattctccaaatctctgcttcacaaattgctctatggtcatgatactttggtatag |
202 |
Q |
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| T |
32568702 |
tgtggatgtataaggtaagtagcaagaactttagcttctctcttaattctaaatatctctgcttcacaaattgctccatggtcatgatactttggtatag |
32568603 |
T |
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| Q |
203 |
ctctataatctctttccttgctctctt |
229 |
Q |
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| T |
32568602 |
ctctataatatctttccttgctctctt |
32568576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 32614398 - 32614490
Alignment:
| Q |
83 |
tgaaattaaagattttggcatgtgggtgcataacgtatgtatcaagaactttagcttctcacttaattctccaaatctctgcttcacaaattg |
175 |
Q |
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|||||| |||||||| |||| ||| ||| | || || |||||||||||||| ||||||||||||| ||| | |||||||| ||| |||||||| |
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| T |
32614398 |
tgaaatgaaagatttaggcaagtgagtgtacaaggtttgtatcaagaacttgagcttctcacttagttcccgaaatctcttctttacaaattg |
32614490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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