View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2087_low_28 (Length: 222)

Name: NF2087_low_28
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2087_low_28
NF2087_low_28
[»] chr4 (10 HSPs)
chr4 (1-222)||(25038666-25038887)
chr4 (1-165)||(25017559-25017723)
chr4 (95-154)||(25189367-25189426)
chr4 (71-157)||(4600148-4600234)
chr4 (56-160)||(4624381-4624485)
chr4 (71-155)||(25160169-25160253)
chr4 (75-157)||(24986320-24986402)
chr4 (75-157)||(25000761-25000843)
chr4 (75-157)||(25046723-25046805)
chr4 (71-155)||(25180398-25180482)
[»] chr2 (3 HSPs)
chr2 (63-155)||(42167203-42167295)
chr2 (71-154)||(42290572-42290655)
chr2 (71-154)||(42156724-42156807)
[»] chr6 (2 HSPs)
chr6 (87-160)||(29406191-29406264)
chr6 (87-151)||(29460063-29460127)
[»] chr5 (1 HSPs)
chr5 (71-154)||(30360889-30360972)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25038666 - 25038887
Alignment:
Q  1 cagcagctgcatgagcaaggagttggttgtgtgagacgatgtaaggttctgaacccaaactgtaagagtgtggctcattgaaggtaatccaatgcttcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25038666 cagcagctgcatgagcaaggagttggttgtgtgagacgatgtaaggttctgaacccaaactgtaagagtgtggctcattgaaggtaatccaatgcttcac 25038765  T
Q  101 tctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctgcatatgtataaaatttaacaacaaaaacataagaaatgaaacaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||    
T  25038766 tctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctgcatatgtataaaatttaacaacaaaaacatcagcaatgaaaccat 25038865  T
Q  201 ataaaatacatatttcaatcga 222  Q
    ||||||||||||||||||||||    
T  25038866 ataaaatacatatttcaatcga 25038887  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 25017559 - 25017723
Alignment:
Q  1 cagcagctgcatgagcaaggagttggttgtgtgagacgatgtaaggttctgaacccaaactgtaagagtgtggctcattgaaggtaatccaatgcttcac 100  Q
    ||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||   ||||| ||||||||||||||||||||||||||    
T  25017559 cagcagctgcatgagcaaggagttggttgtgtgtggccatgtatggttctgaacccaaactgtaaacatgtgggtcattgaaggtaatccaatgcttcac 25017658  T
Q  101 tctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctgcatatgtata 165  Q
    ||  ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  25017659 tcggtctccaaattccttgaagcatagctcggcatagtcctgaaaatcatttctgcatatatata 25017723  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 25189367 - 25189426
Alignment:
Q  95 cttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttct 154  Q
    ||||||||||||||| |||||||||||||| || || ||||||||| |||||||||||||    
T  25189367 cttcactctatctccaaattccttgaagcaaagatcagcatagtctcgaaaatcatttct 25189426  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 4600148 - 4600234
Alignment:
Q  71 tggctcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctgca 157  Q
    ||||||||| || |||| ||||||||| ||||||||||| ||||| | |||||||| |||  || |||| | |||||||||||||||    
T  4600148 tggctcattaaaagtaacccaatgctttactctatctccaaattcttggaagcatatctccacaaagtccttaaaatcatttctgca 4600234  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 4624381 - 4624485
Alignment:
Q  56 caaactgtaagagtgtggctcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctg 155  Q
    |||| ||||||||  ||||||||| || |||| ||||||||| || || ||||| ||||||||||||||||  ||  || |||| | |||||| ||||||    
T  4624381 caaagtgtaagagaatggctcattaaaagtaacccaatgctttacactgtctccaaattccttgaagcatatatccacaaagtccttaaaatcttttctg 4624480  T
Q  156 catat 160  Q
    |||||    
T  4624481 catat 4624485  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 25160169 - 25160253
Alignment:
Q  71 tggctcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctg 155  Q
    |||||| || || |||| ||||| ||| |||||||| || ||||||||||| || || || ||||||||||||||||| ||||||    
T  25160169 tggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctg 25160253  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 24986320 - 24986402
Alignment:
Q  75 tcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctgca 157  Q
    ||||| || ||||||||||| ||||| ||||| || ||||||||| |||| || || |||||||| | |||||||| ||||||    
T  24986320 tcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctgca 24986402  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 25000843 - 25000761
Alignment:
Q  75 tcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctgca 157  Q
    ||||| || ||||||||||| ||||| ||||| || |||||||||||||| || || ||||||||   |||||||| ||||||    
T  25000843 tcattcaaagtaatccaatgtttcaccctatcgccaaattccttgaagcaaagttcagcatagtccctaaaatcatctctgca 25000761  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 25046723 - 25046805
Alignment:
Q  75 tcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctgca 157  Q
    ||||| || ||| ||||| | ||||| ||||| || |||||||||||||| || || |||||||| | |||||||||||||||    
T  25046723 tcattcaaagtagtccaacgtttcaccctatcaccaaattccttgaagcaaagatcagcatagtccttaaaatcatttctgca 25046805  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 25180398 - 25180482
Alignment:
Q  71 tggctcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctg 155  Q
    ||||||||| || || |||||||| || ||||||||||| |||   || ||||| || || ||||||||||||||||| ||||||    
T  25180398 tggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctg 25180482  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 42167203 - 42167295
Alignment:
Q  63 taagagtgtggctcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctg 155  Q
    ||||||| |||||||||||| |||||||||| |||||| |||||||| || || ||||| || || || ||||||||||||||||||||||||    
T  42167203 taagagtatggctcattgaaagtaatccaatacttcaccctatctccaaactctttgaaacaaagttccgcatagtcttgaaaatcatttctg 42167295  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 42290655 - 42290572
Alignment:
Q  71 tggctcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttct 154  Q
    |||||||||||| || ||||||| |||||| |||||||| || || ||||| || || || || ||||||||||||||||||||    
T  42290655 tggctcattgaaagtgatccaatacttcaccctatctccaaactctttgaaacaaagttccgcgtagtcttgaaaatcatttct 42290572  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 42156724 - 42156807
Alignment:
Q  71 tggctcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttct 154  Q
    |||||||||||| ||  |||||| |||||| |||||||| || || ||||| || || || ||||| |||||||||||||||||    
T  42156724 tggctcattgaaagtggtccaatacttcaccctatctccaaactctttgaaacaaagttccgcataatcttgaaaatcatttct 42156807  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 29406264 - 29406191
Alignment:
Q  87 atccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctgcatat 160  Q
    |||||||||||||| |||||||||||||||||  | || ||||||||||||||| |||||||||| || |||||    
T  29406264 atccaatgcttcaccctatctccgaattccttataacaaagctctgcatagtctcgaaaatcattcctacatat 29406191  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 29460063 - 29460127
Alignment:
Q  87 atccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatt 151  Q
    ||||||||||| || |||||||| ||||| || || || |||||| |||||||||||||||||||    
T  29460063 atccaatgctttaccctatctccaaattctttaaaacaaagctctacatagtcttgaaaatcatt 29460127  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 30360972 - 30360889
Alignment:
Q  71 tggctcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttct 154  Q
    ||||||||| |  |||||||| | ||||||||||||||| |||||||||||||| ||||| || || ||  |||||||||||||    
T  30360972 tggctcatttatcgtaatccagtacttcactctatctccaaattccttgaagcaaagctccgcgtaatcccgaaaatcatttct 30360889  T

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