View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2087_low_3 (Length: 562)

Name: NF2087_low_3
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2087_low_3
NF2087_low_3
[»] chr4 (3 HSPs)
chr4 (11-546)||(51986936-51987480)
chr4 (164-237)||(51986349-51986422)
chr4 (218-278)||(47489273-47489333)
[»] chr1 (4 HSPs)
chr1 (164-278)||(50269384-50269498)
chr1 (187-277)||(46208087-46208177)
chr1 (304-356)||(46209538-46209590)
chr1 (186-244)||(46209419-46209477)
[»] chr6 (2 HSPs)
chr6 (182-278)||(655604-655700)
chr6 (172-244)||(15380965-15381037)
[»] chr2 (5 HSPs)
chr2 (164-278)||(45231430-45231545)
chr2 (164-279)||(45230119-45230235)
chr2 (304-356)||(5326197-5326249)
chr2 (164-278)||(39673793-39673906)
chr2 (218-278)||(39674912-39674972)
[»] chr7 (2 HSPs)
chr7 (304-356)||(28087753-28087805)
chr7 (232-278)||(44258016-44258062)
[»] chr3 (3 HSPs)
chr3 (164-235)||(24381307-24381378)
chr3 (309-368)||(22341220-22341279)
chr3 (304-356)||(22341855-22341907)
[»] chr8 (2 HSPs)
chr8 (306-356)||(29636954-29637004)
chr8 (208-277)||(41441251-41441320)
[»] chr5 (2 HSPs)
chr5 (218-278)||(37253478-37253538)
chr5 (309-358)||(21550029-21550078)
[»] scaffold0169 (1 HSPs)
scaffold0169 (304-356)||(25003-25055)


Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 546
Target Start/End: Original strand, 51986936 - 51987480
Alignment:
Q  11 caaaggaagagaggttctggttttgaagccttgttattattgtgtggcaatggagttgaattcattatttgggttctgggtttaagaaagggatgaagaa 110  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51986936 caaaggaagagatgttctggttttgaagccttgttattgttgtgtggcaatggagttgaattcattatttgggttctgggtttaagaaagggatgaagaa 51987035  T
Q  111 tatgaaggatttagatgaggaagatgattgtcacgtgctcccttcaattaatc---------ttttatttttaattaatcaaatgccacgtggcgtccat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| ||| |||||    
T  51987036 tatgaaggatttagatgaggaagatgattgtcacgtgctcccttcaattaatcttttattttttttatttttaattaatcaaatgccacgcggcatccat 51987135  T
Q  202 ctcctggccacctgggctttgaccctgtcaaaatcagagggggtctatgaattgaaaaagggtgtgaagttaggggggtcaaaaagtgannnnnnnnnaa 301  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||         ||    
T  51987136 ctcctggccacctgggctttgatccagtcaaaatcagagggggtctatgagttgcaaaagggtgtgaagtta-gggggtcgaaaagtgatttttttttaa 51987234  T
Q  302 taga-ggtcaaaattgctacggagtcaaatatagggggctaaaattgcattttagctattattttttactaagtcacatgttcttacataatttctacta 400  Q
    |||| |||||||||||||| ||||||||| ||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  51987235 tagagggtcaaaattgctatggagtcaaacataggaggccaaagttgcattttagccattattttttactaagtcacatgttcttacagaatttctacta 51987334  T
Q  401 aagaaaatgtcactttttgtggtgttcttgtgatttagttcttatagcattggaccaaaatattctcagnnnnnnnnccaaattattaacatactaacat 500  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  51987335 aagaaaatgtcactttttgtggtgttcatgtgatttagttcttatagcattggaccaaaatattctcagttttttttccaaattattaacatactaacat 51987434  T
Q  501 tgtagtttttgatgaactagtttcgcgcgggaaagaacgaatataa 546  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  51987435 tgtagtttttgatgaactagttttgcgcgggaaagaaagaatataa 51987480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 51986422 - 51986349
Alignment:
Q  164 ttttatttttaattaatcaaatgccacgtggcgtccatctcctggccacctgggctttgaccctgtcaaaatca 237  Q
    ||||||||||||||||| |||||||||||||||||||||||  ||| || ||||||||||||| ||||||||||    
T  51986422 ttttatttttaattaattaaatgccacgtggcgtccatctctcggctacatgggctttgaccccgtcaaaatca 51986349  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 47489273 - 47489333
Alignment:
Q  218 ctttgaccctgtcaaaatcagagggggtctatgaattgaaaaagggtgtgaagttaggggg 278  Q
    ||||||||  |||||||||||||||||  ||||  ||| ||||||| ||||||||||||||    
T  47489273 ctttgacctggtcaaaatcagagggggcttatgggttgcaaaagggggtgaagttaggggg 47489333  T

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Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 50269498 - 50269384
Alignment:
Q  164 ttttatttttaattaatcaaatgccacgtggcgtccatctcctggccacctgggctttgaccctgtcaaaatcagagggggtctatgaattgaaaaaggg 263  Q
    |||||||||||||| || |||| |||||||||||||||||  |||| |||||||||||||||| |||||||||||||||||||  ||| ||| |||||||    
T  50269498 ttttatttttaattcattaaattccacgtggcgtccatctaatggctacctgggctttgacccagtcaaaatcagagggggtcactgagttgcaaaaggg 50269399  T
Q  264 tgtgaagttaggggg 278  Q
     ||||| ||||||||    
T  50269398 ggtgaaattaggggg 50269384  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 46208177 - 46208087
Alignment:
Q  187 ccacgtggcgtccatctcctggccacctgggctttgaccctgtcaaaatcagagggggtctatgaattgaaaaagggtgtgaagttagggg 277  Q
    |||||||||||||||||| ||||||| ||||||||||||  ||||||||  |||||||||  ||| ||| |||| || |||||||| ||||    
T  46208177 ccacgtggcgtccatctcatggccacgtgggctttgacctagtcaaaataggagggggtcactgagttgcaaaaaggggtgaagttggggg 46208087  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 46209538 - 46209590
Alignment:
Q  304 gaggtcaaaattgctacggagtcaaatatagggggctaaaattgcattttagc 356  Q
    |||| |||||||||||||||| |||| |||||||||||||| |||||||||||    
T  46209538 gaggccaaaattgctacggagccaaacatagggggctaaaagtgcattttagc 46209590  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 46209419 - 46209477
Alignment:
Q  186 gccacgtggcgtccatctcctggccacctgggctttgaccctgtcaaaatcagaggggg 244  Q
    ||||| |||| |||||||| ||||||| ||||||||||||| ||||||||  |||||||    
T  46209419 gccacatggcatccatctcatggccacgtgggctttgacccggtcaaaataggaggggg 46209477  T

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Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 655700 - 655604
Alignment:
Q  182 aaatgccacgtggcgtccatctcctggccacctgggctttgaccctgtcaaaatcagagggggtctatgaattgaaaaagggtgtgaagttaggggg 278  Q
    ||||||||||||||||||||    ||||||| |||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  655700 aaatgccacgtggcgtccattgagtggccacttgggttttgaccctgtcaaaatcagagggggtctatgagttgcaaaagggggtgaagttaggggg 655604  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 15380965 - 15381037
Alignment:
Q  172 ttaattaatcaaatgccacgtggcgtccatctcctggccacctgggctttgaccctgtcaaaatcagaggggg 244  Q
    |||||| || ||||||||||||||||||||||   |||||| ||||||||||||  ||||||||  |||||||    
T  15380965 ttaattcattaaatgccacgtggcgtccatctaagggccacatgggctttgaccgggtcaaaataggaggggg 15381037  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 45231430 - 45231545
Alignment:
Q  164 ttttatttttaatt-aatcaaatgccacgtggcgtccatctcctggccacctgggctttgaccctgtcaaaatcagagggggtctatgaattgaaaaagg 262  Q
    |||||||||||||| ||  |||| |||||||||||||||    ||||||| |   ||||||||| ||||||||||||||||| |||||  ||| ||||||    
T  45231430 ttttatttttaattcaaaaaaattccacgtggcgtccattgagtggccacttaaactttgacccggtcaaaatcagagggggcctatgggttgcaaaagg 45231529  T
Q  263 gtgtgaagttaggggg 278  Q
    | ||||||||||||||    
T  45231530 gggtgaagttaggggg 45231545  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 279
Target Start/End: Complemental strand, 45230235 - 45230119
Alignment:
Q  164 ttttatttttaatt-aatcaaatgccacgtggcgtccatctcctggccacctgggctttgaccctgtcaaaatcagagggggtctatgaattgaaaaagg 262  Q
    |||||||||||||| ||  |||| |||||||||||||||    || |||| ||  ||||||||| ||||||||||||||||| || ||| ||| ||||||    
T  45230235 ttttatttttaattcaaaaaaattccacgtggcgtccattgagtgaccacttgaactttgacccggtcaaaatcagagggggcctctgagttgcaaaagg 45230136  T
Q  263 gtgtgaagttagggggg 279  Q
    | |||||| ||||||||    
T  45230135 gggtgaaggtagggggg 45230119  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 5326249 - 5326197
Alignment:
Q  304 gaggtcaaaattgctacggagtcaaatatagggggctaaaattgcattttagc 356  Q
    |||| |||||||||||| ||| |||||||||||||| |||| |||||||||||    
T  5326249 gaggccaaaattgctacagagccaaatatagggggccaaaagtgcattttagc 5326197  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 39673906 - 39673793
Alignment:
Q  164 ttttatttttaattaatcaaatgccacgtggcgtccatctcctggccacctgggctttgaccctgtcaaaatcagagggggtctatgaattgaaaaaggg 263  Q
    ||||| || ||||| || ||||||||||||||||||| ||   ||| || ||||||||||||  |||||||| | | ||||||||||| ||| |||||||    
T  39673906 ttttaattgtaattcattaaatgccacgtggcgtccacctaaaggctacttgggctttgaccgggtcaaaatta-aaggggtctatgagttgcaaaaggg 39673808  T
Q  264 tgtgaagttaggggg 278  Q
     |  |||||||||||    
T  39673807 ggcaaagttaggggg 39673793  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 39674912 - 39674972
Alignment:
Q  218 ctttgaccctgtcaaaatcagagggggtctatgaattgaaaaagggtgtgaagttaggggg 278  Q
    ||||||||| |||||||||||| |||| ||| || ||| ||||||| | ||||||||||||    
T  39674912 ctttgacccggtcaaaatcagaaggggcctaagatttgcaaaagggggagaagttaggggg 39674972  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 28087753 - 28087805
Alignment:
Q  304 gaggtcaaaattgctacggagtcaaatatagggggctaaaattgcattttagc 356  Q
    |||| ||||||||||||||||||||||||| ||||| |||| |||||||||||    
T  28087753 gaggccaaaattgctacggagtcaaatataaggggccaaaagtgcattttagc 28087805  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 44258016 - 44258062
Alignment:
Q  232 aaatcagagggggtctatgaattgaaaaagggtgtgaagttaggggg 278  Q
    |||| ||||||||||||||||||  ||||||| ||||||||||||||    
T  44258016 aaattagagggggtctatgaattataaaagggggtgaagttaggggg 44258062  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 24381378 - 24381307
Alignment:
Q  164 ttttatttttaattaatcaaatgccacgtggcgtccatctcctggccacctgggctttgaccctgtcaaaat 235  Q
    ||||||||||||||||| ||||||||| || | |||||||  |||||| ||||| |||||||| ||||||||    
T  24381378 ttttatttttaattaattaaatgccacatgacatccatctattggccatctgggatttgacccagtcaaaat 24381307  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 368
Target Start/End: Complemental strand, 22341279 - 22341220
Alignment:
Q  309 caaaattgctacggagtcaaatatagggggctaaaattgcattttagctattatttttta 368  Q
    ||||||||||| |||| |||||||||||||  |||| ||||||||||| || ||||||||    
T  22341279 caaaattgctatggagccaaatatagggggtcaaaagtgcattttagccataatttttta 22341220  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 22341855 - 22341907
Alignment:
Q  304 gaggtcaaaattgctacggagtcaaatatagggggctaaaattgcattttagc 356  Q
    ||||||||||||||||| |||||||| |||||||   |||| |||||||||||    
T  22341855 gaggtcaaaattgctacagagtcaaacataggggaacaaaaatgcattttagc 22341907  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 29636954 - 29637004
Alignment:
Q  306 ggtcaaaattgctacggagtcaaatatagggggctaaaattgcattttagc 356  Q
    ||||||||||||||||||| ||||||||| |||| |||| |||||||||||    
T  29636954 ggtcaaaattgctacggagccaaatatagagggccaaaagtgcattttagc 29637004  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 41441251 - 41441320
Alignment:
Q  208 gccacctgggctttgaccctgtcaaaatcagagggggtctatgaattgaaaaagggtgtgaagttagggg 277  Q
    ||||| ||| |||||||||  ||||||| |||||||| |||||| ||| |||||||  ||||||||||||    
T  41441251 gccacatggcctttgacccgatcaaaattagagggggcctatgagttgtaaaaggggatgaagttagggg 41441320  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 37253538 - 37253478
Alignment:
Q  218 ctttgaccctgtcaaaatcagagggggtctatgaattgaaaaagggtgtgaagttaggggg 278  Q
    ||||||||  |||||||| |||||||| |||| ||||| ||||||| ||||||||||||||    
T  37253538 ctttgaccgggtcaaaattagagggggcctataaattgcaaaagggggtgaagttaggggg 37253478  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 21550078 - 21550029
Alignment:
Q  309 caaaattgctacggagtcaaatatagggggctaaaattgcattttagcta 358  Q
    |||||||||||||| | |||| ||||||||| |||| |||||||||||||    
T  21550078 caaaattgctacggggccaaacatagggggccaaaagtgcattttagcta 21550029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 25055 - 25003
Alignment:
Q  304 gaggtcaaaattgctacggagtcaaatatagggggctaaaattgcattttagc 356  Q
    |||| |||||||||||||  |||||| ||||||||| |||| |||||||||||    
T  25055 gaggccaaaattgctacgtggtcaaacatagggggccaaaagtgcattttagc 25003  T

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