View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2087_low_30 (Length: 213)
Name: NF2087_low_30
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2087_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 624670 - 624864
Alignment:
| Q |
4 |
aatggcaaaggatgaatcatggcctatgataagagttctagttagacctcagtgtttttaggctcttccaagatctagttttcgttcaaaacagattccc |
103 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
624670 |
aatggcagaggatgagtcatggcctatgataagagttctagttagacctcagtgcttttaggctcttctaagatctagttttcgttcaaaacagtttccc |
624769 |
T |
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| Q |
104 |
ttgtttccatctcctctcggtacatggggacataactcatatcaaacaaatattttccatttccatatataccctctcagtttcaggaacacaat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
624770 |
ttgtttccatctcctctcggtacatggggacataactcatatcaaacaaatattttccatttccatatataccctctcagtttcaggaacacaat |
624864 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 6243139 - 6243003
Alignment:
| Q |
28 |
tatgataagagttctagttagacctcagtgtttttaggctcttccaagatctagttttcgttcaaaacagattcccttgtttccatctcctctcggtaca |
127 |
Q |
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||||| |||||| ||||||||| || |||| ||| || |||||||||||||||||||| |||||| |||| | ||| || | || ||||||| ||| |
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| T |
6243139 |
tatgacaagagtcctagttagatcttagtgctttcagactcttccaagatctagtttttgttcaatacagtctatcttattcctgtcacctctcgatact |
6243040 |
T |
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| Q |
128 |
tggggacataactcatatcaaacaaatattttccatt |
164 |
Q |
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| | ||| |||||||||||||||||| |||||||||| |
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| T |
6243039 |
tagagacgtaactcatatcaaacaaacattttccatt |
6243003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 15244732 - 15244629
Alignment:
| Q |
67 |
tcttccaagatctagttttcgttcaaaacagattcccttgtttccatctcctctcggtacatggggacataactcatatcaaacaaatattttccatttc |
166 |
Q |
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|||||||||||||||| | || |||||||| || |||||| || || ||| || ||||| ||||| |||||||||||||||||| |||||||||| | |
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| T |
15244732 |
tcttccaagatctagtacttgtacaaaacagtctctcttgttcccgtcacctttcagtacacagggacgtaactcatatcaaacaaacattttccattcc |
15244633 |
T |
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| Q |
167 |
cata |
170 |
Q |
| |
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|||| |
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| T |
15244632 |
cata |
15244629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 19709759 - 19709709
Alignment:
| Q |
103 |
cttgtttccatctcctctcggtacatggggacataactcatatcaaacaaa |
153 |
Q |
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|||||| |||| |||| ||||||| | |||||||||||||||||||||||| |
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| T |
19709759 |
cttgttcccatatcctttcggtacttagggacataactcatatcaaacaaa |
19709709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 26572334 - 26572473
Alignment:
| Q |
25 |
gcctatgataagagttctagttagacctcagtgtttttaggctcttccaagatctagttttcgttcaaaacagattcccttgtttccatctcctctcggt |
124 |
Q |
| |
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|||| ||| |||||| ||||||||| ||||| ||| |||||||||||| ||||||| |||| |||| || || |||||| ||||| ||| ||||| |
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| T |
26572334 |
gcctgtgacaagagtcctagttagatctcagcactttcaggctcttccaatatctagtcctcgtgcaaattagtctctcttgttaccatcacctttcggt |
26572433 |
T |
|
| Q |
125 |
acatggggacataactcatatcaaacaaatattttccatt |
164 |
Q |
| |
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||| ||||| |||||||||||||||||| ||||| |||| |
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| T |
26572434 |
tcatagggacttaactcatatcaaacaaacatttttcatt |
26572473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 19452165 - 19452318
Alignment:
| Q |
5 |
atggcaaaggatgaatcatggcctatgataagagttctagttagacctcagtgtttttaggctcttccaagatctagttttcgttcaaaacagattccct |
104 |
Q |
| |
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|||| |||||||||||||| |||| ||| |||||| ||| ||||| ||||| | || || |||||||||||||||||||| |||||||||| || || |
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| T |
19452165 |
atggtaaaggatgaatcattgcctttgacaagagtcctaattagatctcagcgcttc-agactcttccaagatctagtttttgttcaaaacaatatctct |
19452263 |
T |
|
| Q |
105 |
tgtttccatctcctctcggtacatggggacataactcatatcaaacaaatatttt |
159 |
Q |
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|
|||||| || | ||||||| | | | ||| |||||| ||||||||||| ||||| |
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| T |
19452264 |
tgtttctgtcacttctcggtccgtagagacgtaactcttatcaaacaaacatttt |
19452318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 19528911 - 19528758
Alignment:
| Q |
5 |
atggcaaaggatgaatcatggcctatgataagagttctagttagacctcagtgtttttaggctcttccaagatctagttttcgttcaaaacagattccct |
104 |
Q |
| |
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|||| |||||||||||||| |||| ||| |||||| ||| ||||| ||||| | || || |||||||||||||||||||| |||||||||| || || |
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| T |
19528911 |
atggtaaaggatgaatcattgcctttgacaagagtcctaattagatctcagcgcttc-agactcttccaagatctagtttttgttcaaaacaatatctct |
19528813 |
T |
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| Q |
105 |
tgtttccatctcctctcggtacatggggacataactcatatcaaacaaatatttt |
159 |
Q |
| |
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|||||| || | ||||||| | | | ||| |||||| ||||||||||| ||||| |
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| T |
19528812 |
tgtttctgtcacttctcggtccgtagagacgtaactcttatcaaacaaacatttt |
19528758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 2916143 - 2916211
Alignment:
| Q |
25 |
gcctatgataagagttctagttagacctcagtgtttttaggctcttccaagatctagttttcgttcaaa |
93 |
Q |
| |
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|||||||| |||||| |||| |||| |||| || ||| | ||||||| |||||||||||||| |||||| |
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| T |
2916143 |
gcctatgacaagagtcctagctagatctcactgctttcaagctcttctaagatctagttttcattcaaa |
2916211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 42295295 - 42295339
Alignment:
| Q |
120 |
tcggtacatggggacataactcatatcaaacaaatattttccatt |
164 |
Q |
| |
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||||||| | |||||||||||||||||||||||| ||||| |||| |
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| T |
42295295 |
tcggtacttagggacataactcatatcaaacaaacatttttcatt |
42295339 |
T |
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