View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2087_low_6 (Length: 526)
Name: NF2087_low_6
Description: NF2087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2087_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 22302974 - 22302694
Alignment:
| Q |
20 |
ctgaatttctaattttgtcaccgaattatataatccgaacccnnnnnnntggtctggatgattgacaaatgtgtttttccttttattttccattcttagt |
119 |
Q |
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| T |
22302974 |
ctgaatttctaattttgtcaccgaattatataatccgaacccaaaaaa-tggtctggatgattgacaaatgtgtttttccttttattttccattcttagt |
22302876 |
T |
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| Q |
120 |
gatgatggcatgtgaatctttgtaagaatttattttccatttttggtgatggtaaaagtgaatcattgcaagattgtctttcttcctttacaatatggtt |
219 |
Q |
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| T |
22302875 |
gatggt---atgtgaatctt-gtaagaatttattttccatttttggtgatggtaa--gtgaatcattgcaagattgtctttcttcctttacaatatggtt |
22302782 |
T |
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| Q |
220 |
ttttat-ttttnnnnnnnnnnnccaaatattatgtttcagccaaaacttatcttctaaaagcataatactaaggataaagtttcaaat |
306 |
Q |
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| T |
22302781 |
ttttattttttttaaaaaaaaaccaaatattatgtttcagccaaaacttatcttctaaaagcataatactatggataaagtttcaaat |
22302694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 430 - 526
Target Start/End: Complemental strand, 22286705 - 22286610
Alignment:
| Q |
430 |
acatggttcaacaacaataaacaacttaagcaccaaaacaactgaatttttctaatgtgcctcaaaatacaaacataggaaaaacaacagaaactat |
526 |
Q |
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||||||||||||| |||||||||||||||| |||| || ||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||||| |
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| T |
22286705 |
acatggttcaacagcaataaacaacttaaggaccacaagaactgaatttt-ctaatgtgcctcaaaatacaaccatacaaaaaacagcagaaactat |
22286610 |
T |
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