View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20880_high_10 (Length: 247)
Name: NF20880_high_10
Description: NF20880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20880_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2284743 - 2284504
Alignment:
| Q |
1 |
agtttagtcttatgtagtgtgcctcgagattactttgcagagatctttcataagccgataaacatcttatatccggttctagatgctattaatccttcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2284743 |
agtttagtcttatgtagtgtgcctcgagattactttgcagagatctttcataagccgataaacatcttatatccggttctagatgctattaatccttcta |
2284644 |
T |
|
| Q |
101 |
tctcagaagatgctaacacaaacctcactacattgtttaccattgatgagttcagagatgccatgttttctatgaagctagataagtatctgggtcctgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2284643 |
tctcagaagatgctaacacaaacctcactacattgtttaccattgatgagttcagagatgccatgttttctatgaagctagataagtatctgggtcctgg |
2284544 |
T |
|
| Q |
201 |
cagatttaatccagacttttatcagtatttttggcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2284543 |
cagatttaatccagacttttatcagtatttttggcctttg |
2284504 |
T |
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