View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20880_high_13 (Length: 240)
Name: NF20880_high_13
Description: NF20880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20880_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1092389 - 1092166
Alignment:
| Q |
1 |
ctttaatttgaatttgtttacttattttatttatgtgcgataggttgagctttgcaaagatgatgagtttcttgtgatagcttgtgatgggatatggtat |
100 |
Q |
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| T |
1092389 |
ctttaatttgaatttgtttacttattttatttatgtgcgataggttgagctttgcaaagatgatgagtttcttgtgatagcttgtgatgggatatggtat |
1092290 |
T |
|
| Q |
101 |
gttatatagatgacaaatgttccctttttattatgtattctcagttctcactttaatttacttctgtataacttctttatgtgtctagggattgcatgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1092289 |
gttatatagatgacaaatgttccctttttattatgtattctcagttctcactttaatttacttctgtataacttctttatgtgtctagggattgcatgtc |
1092190 |
T |
|
| Q |
201 |
cagccagcagcttgtggacttcat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
1092189 |
cagccagcagcttgtggacttcat |
1092166 |
T |
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