View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20880_high_9 (Length: 250)
Name: NF20880_high_9
Description: NF20880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20880_high_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 44387477 - 44387240
Alignment:
| Q |
13 |
gagacagtaggggcagcattgttttggtgactagctccatggttatgtgactcgttttggtgactagttccatggttatgtgactcattatcatgaacag |
112 |
Q |
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| T |
44387477 |
gagacagtaggggcagcattgttttggtgactagctccatggttatgtgactcgttttggtgactagttccatggttatgtgactcattatcatgaacag |
44387378 |
T |
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| Q |
113 |
gagacacaatcataatcggaaagggcctggaaccataatgtttatacctatcaaacctttgtgtattttccttcattcgaccatattcataagcaacaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44387377 |
gagacacaatcataatcggaaagggcctggaaccataatgtttatacctatcaaacctttgtgtattttccttcattcgaccatattcataagcaacaaa |
44387278 |
T |
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| Q |
213 |
atcttcatgtgacgtatgcatatgatgaatatcctcct |
250 |
Q |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
44387277 |
atcttcatgtgacatatgcatatgatgaatatcctcct |
44387240 |
T |
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