View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20880_low_16 (Length: 238)
Name: NF20880_low_16
Description: NF20880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20880_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 5306839 - 5307029
Alignment:
| Q |
17 |
cacagacagcagcaacaatgtgtcgatatgcaatgagtgcaaaaatgaaagttccttgaaccaagatgacccttgataaaagttgtatcccagttccaaa |
116 |
Q |
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| T |
5306839 |
cacaaacagcagcaacaatttgtcgatatgcattgagtgcaaaaatgaaagtgccctgaaccaagatgacccttgataaaagttgtatcccagttccaaa |
5306938 |
T |
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| Q |
117 |
tatttgcactaataacatgctaagaagagcttgggaagagataaaccattctttcatactttgagttttctctgtgttactcatatttgtc |
207 |
Q |
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| T |
5306939 |
tatttgcactaataacatgctaagaagagcttgggaagagatgaaccattctttcatactttgagttctctctgtgttactcatatttgtc |
5307029 |
T |
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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 29145015 - 29144830
Alignment:
| Q |
9 |
aggagcagcacagacagcagcaacaatgtgtcgatatgcaatgagtgcaaaaatgaaagttccttgaaccaagatgacccttgataaaagttgtatccca |
108 |
Q |
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| T |
29145015 |
aggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatccca |
29144916 |
T |
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| Q |
109 |
gttccaaatatttgcactaataacatgctaagaagagcttgggaagagataaaccattctttcatactttgagttttctctgtgtt |
194 |
Q |
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| T |
29144915 |
gttgcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtt |
29144830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 29226958 - 29227143
Alignment:
| Q |
9 |
aggagcagcacagacagcagcaacaatgtgtcgatatgcaatgagtgcaaaaatgaaagttccttgaaccaagatgacccttgataaaagttgtatccca |
108 |
Q |
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||||||| |||| | |||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||| ||||| ||||||| |||||| |||||| |
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| T |
29226958 |
aggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatccca |
29227057 |
T |
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| Q |
109 |
gttccaaatatttgcactaataacatgctaagaagagcttgggaagagataaaccattctttcatactttgagttttctctgtgtt |
194 |
Q |
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||| |||||||||||||||||||||| |||||||| ||||| || || | |||||||| |||||||||| | || |||||||||| |
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| T |
29227058 |
gttgcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtt |
29227143 |
T |
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