View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20880_low_19 (Length: 228)

Name: NF20880_low_19
Description: NF20880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20880_low_19
NF20880_low_19
[»] chr3 (49 HSPs)
chr3 (1-228)||(6096136-6096375)
chr3 (63-181)||(51398499-51398617)
chr3 (76-228)||(36018330-36018482)
chr3 (48-228)||(31340577-31340771)
chr3 (48-154)||(29812720-29812827)
chr3 (63-154)||(34490687-34490778)
chr3 (76-228)||(43402326-43402490)
chr3 (76-228)||(43404269-43404433)
chr3 (31-154)||(49200073-49200196)
chr3 (48-212)||(55302517-55302692)
chr3 (48-154)||(4569391-4569497)
chr3 (71-228)||(40912800-40912969)
chr3 (47-154)||(46173173-46173279)
chr3 (48-197)||(54593144-54593305)
chr3 (9-154)||(44331851-44332001)
chr3 (71-154)||(5236861-5236944)
chr3 (63-197)||(29810541-29810687)
chr3 (53-154)||(44331232-44331333)
chr3 (73-154)||(5258548-5258630)
chr3 (67-154)||(7761941-7762028)
chr3 (67-154)||(7764128-7764216)
chr3 (67-154)||(45094840-45094928)
chr3 (48-154)||(36029530-36029637)
chr3 (73-154)||(3393289-3393370)
chr3 (53-154)||(16264785-16264887)
chr3 (76-154)||(40592353-40592431)
chr3 (50-115)||(40734156-40734221)
chr3 (50-115)||(40735087-40735152)
chr3 (35-115)||(8370020-8370099)
chr3 (55-114)||(23410774-23410833)
chr3 (48-115)||(27027183-27027250)
chr3 (48-154)||(27038478-27038585)
chr3 (48-154)||(35925927-35926034)
chr3 (67-154)||(9636532-9636620)
chr3 (48-154)||(47923445-47923553)
chr3 (48-115)||(21711678-21711745)
chr3 (52-115)||(30709342-30709405)
chr3 (147-197)||(29812832-29812882)
chr3 (63-154)||(37726111-37726203)
chr3 (63-153)||(33386233-33386324)
chr3 (189-228)||(49200007-49200046)
chr3 (101-154)||(5260727-5260781)
chr3 (67-153)||(8127068-8127154)
chr3 (147-197)||(30709451-30709501)
chr3 (147-228)||(4569502-4569583)
chr3 (81-114)||(24128212-24128245)
chr3 (48-115)||(1735847-1735914)
chr3 (147-175)||(34490783-34490811)
chr3 (67-154)||(39032117-39032205)
[»] scaffold0286 (1 HSPs)
scaffold0286 (31-228)||(10981-11190)
[»] chr4 (53 HSPs)
chr4 (31-228)||(6655379-6655588)
chr4 (63-228)||(2209175-2209340)
chr4 (33-154)||(54882465-54882586)
chr4 (63-197)||(26175985-26176119)
chr4 (71-228)||(40630447-40630616)
chr4 (71-228)||(50674382-50674551)
chr4 (68-212)||(26363725-26363881)
chr4 (71-197)||(35661902-35662028)
chr4 (48-152)||(9927867-9927971)
chr4 (63-197)||(12739899-12740034)
chr4 (48-154)||(12745820-12745926)
chr4 (63-197)||(12748105-12748240)
chr4 (67-181)||(56179001-56179116)
chr4 (67-154)||(52095764-52095852)
chr4 (67-181)||(5370452-5370567)
chr4 (81-197)||(34570763-34570891)
chr4 (65-154)||(46570148-46570237)
chr4 (63-154)||(37740299-37740390)
chr4 (55-154)||(5429345-5429444)
chr4 (71-154)||(41639028-41639111)
chr4 (90-228)||(50263234-50263383)
chr4 (48-154)||(25861585-25861693)
chr4 (76-154)||(36314812-36314890)
chr4 (76-154)||(36329021-36329099)
chr4 (85-177)||(10047778-10047871)
chr4 (48-115)||(16628425-16628492)
chr4 (71-202)||(27417513-27417656)
chr4 (101-181)||(48142763-48142844)
chr4 (101-154)||(54200310-54200363)
chr4 (81-154)||(8689083-8689157)
chr4 (50-115)||(3778025-3778090)
chr4 (63-154)||(5148114-5148206)
chr4 (101-153)||(29254205-29254257)
chr4 (67-154)||(6742988-6743075)
chr4 (147-197)||(5429449-5429499)
chr4 (147-181)||(9927826-9927860)
chr4 (76-154)||(54867616-54867694)
chr4 (82-175)||(55085934-55086027)
chr4 (53-154)||(3909760-3909860)
chr4 (67-154)||(5268772-5268860)
chr4 (63-115)||(13992731-13992783)
chr4 (63-115)||(28468073-28468125)
chr4 (149-197)||(29254265-29254313)
chr4 (63-114)||(3754685-3754736)
chr4 (76-115)||(5396272-5396311)
chr4 (52-115)||(16622850-16622913)
chr4 (71-154)||(36994241-36994324)
chr4 (101-154)||(30000877-30000931)
chr4 (76-113)||(48142822-48142859)
chr4 (76-113)||(52083007-52083044)
chr4 (76-113)||(52094014-52094051)
chr4 (1-30)||(54882417-54882446)
chr4 (164-212)||(41639133-41639181)
[»] chr1 (35 HSPs)
chr1 (30-228)||(193034-193244)
chr1 (53-228)||(37033605-37033792)
chr1 (63-154)||(11348174-11348265)
chr1 (63-154)||(37879513-37879604)
chr1 (71-154)||(44454840-44454923)
chr1 (63-150)||(10924896-10924983)
chr1 (63-154)||(31658911-31659002)
chr1 (63-150)||(49918022-49918109)
chr1 (67-154)||(20762348-20762436)
chr1 (49-120)||(28220665-28220737)
chr1 (67-152)||(3189027-3189113)
chr1 (67-152)||(3197844-3197930)
chr1 (67-152)||(3206662-3206748)
chr1 (63-120)||(28223860-28223917)
chr1 (63-154)||(3156540-3156631)
chr1 (147-224)||(13547629-13547706)
chr1 (147-224)||(13549540-13549617)
chr1 (53-153)||(4553053-4553153)
chr1 (101-197)||(30476797-30476905)
chr1 (101-154)||(13316722-13316776)
chr1 (102-154)||(29135762-29135814)
chr1 (48-100)||(29652307-29652359)
chr1 (189-228)||(37879447-37879486)
chr1 (151-197)||(1833295-1833341)
chr1 (147-177)||(31659007-31659037)
chr1 (1-30)||(192989-193018)
chr1 (63-120)||(1833194-1833251)
chr1 (101-154)||(13547711-13547763)
chr1 (101-154)||(13549622-13549674)
chr1 (48-93)||(30476892-30476937)
chr1 (63-154)||(13604191-13604283)
chr1 (63-115)||(19361008-19361060)
chr1 (63-115)||(19365864-19365916)
chr1 (63-115)||(26644469-26644521)
chr1 (147-175)||(29135819-29135847)
[»] chr8 (30 HSPs)
chr8 (31-228)||(42435527-42435736)
chr8 (48-154)||(15212443-15212550)
chr8 (53-197)||(43036086-43036242)
chr8 (53-154)||(30143005-30143106)
chr8 (51-154)||(11383449-11383552)
chr8 (63-153)||(27810971-27811061)
chr8 (48-154)||(22975974-22976080)
chr8 (67-154)||(4731335-4731422)
chr8 (67-154)||(1746622-1746710)
chr8 (71-154)||(12703043-12703126)
chr8 (101-228)||(4283039-4283178)
chr8 (53-154)||(4743597-4743699)
chr8 (67-154)||(31217933-31218021)
chr8 (67-120)||(4733502-4733555)
chr8 (53-154)||(10014822-10014923)
chr8 (82-154)||(34254732-34254805)
chr8 (71-152)||(40221227-40221308)
chr8 (63-154)||(5702048-5702140)
chr8 (67-154)||(34256908-34256996)
chr8 (67-154)||(42497891-42497979)
chr8 (33-154)||(1345775-1345895)
chr8 (67-154)||(19945743-19945831)
chr8 (31-107)||(33351812-33351888)
chr8 (147-181)||(15212555-15212589)
chr8 (101-154)||(17982363-17982417)
chr8 (147-197)||(30143111-30143161)
chr8 (147-197)||(33351919-33351969)
chr8 (101-154)||(44303564-44303618)
chr8 (63-115)||(1261510-1261562)
chr8 (147-175)||(40221315-40221343)
[»] scaffold0014 (1 HSPs)
scaffold0014 (48-228)||(80819-81011)
[»] chr7 (39 HSPs)
chr7 (63-228)||(29608207-29608373)
chr7 (63-228)||(6360448-6360625)
chr7 (48-154)||(47674347-47674454)
chr7 (48-154)||(47676540-47676647)
chr7 (98-197)||(31733311-31733410)
chr7 (42-197)||(14070182-14070350)
chr7 (42-197)||(14380210-14380378)
chr7 (48-154)||(27347581-27347687)
chr7 (48-154)||(4585819-4585925)
chr7 (67-154)||(23554716-23554804)
chr7 (63-154)||(18126318-18126408)
chr7 (51-154)||(2389735-2389838)
chr7 (48-212)||(32358388-32358564)
chr7 (71-154)||(43863942-43864025)
chr7 (155-228)||(48599860-48599933)
chr7 (31-154)||(33331987-33332110)
chr7 (63-154)||(4538955-4539046)
chr7 (63-154)||(4796238-4796329)
chr7 (67-154)||(19495646-19495735)
chr7 (67-154)||(4178451-4178539)
chr7 (81-175)||(2361540-2361635)
chr7 (85-154)||(2647288-2647357)
chr7 (51-154)||(49092127-49092232)
chr7 (101-197)||(2761651-2761759)
chr7 (71-154)||(26416994-26417077)
chr7 (63-150)||(48489103-48489190)
chr7 (147-197)||(18126413-18126463)
chr7 (76-154)||(30026404-30026481)
chr7 (101-154)||(1113367-1113420)
chr7 (48-93)||(34311285-34311330)
chr7 (63-120)||(48599934-48599991)
chr7 (48-154)||(79826-79933)
chr7 (63-115)||(21646495-21646547)
chr7 (63-115)||(25767398-25767450)
chr7 (147-197)||(2647362-2647412)
chr7 (147-181)||(4585930-4585964)
chr7 (101-154)||(24515164-24515218)
chr7 (147-197)||(26417082-26417132)
chr7 (147-181)||(27347692-27347726)
[»] chr5 (32 HSPs)
chr5 (63-197)||(42428779-42428913)
chr5 (101-197)||(533492-533588)
chr5 (49-154)||(42426639-42426745)
chr5 (147-226)||(27015083-27015162)
chr5 (71-197)||(30683268-30683395)
chr5 (48-154)||(32636481-32636588)
chr5 (147-228)||(38746556-38746637)
chr5 (48-154)||(5057489-5057595)
chr5 (42-154)||(37438797-37438910)
chr5 (71-155)||(38746451-38746535)
chr5 (52-114)||(213006-213068)
chr5 (49-154)||(13487864-13487967)
chr5 (48-154)||(40146707-40146813)
chr5 (68-154)||(13239430-13239516)
chr5 (101-154)||(535614-535667)
chr5 (48-154)||(12083731-12083838)
chr5 (145-212)||(5057598-5057665)
chr5 (48-115)||(11916525-11916592)
chr5 (101-154)||(13342771-13342825)
chr5 (147-181)||(13487972-13488006)
chr5 (147-197)||(19806175-19806225)
chr5 (101-154)||(25412472-25412526)
chr5 (63-113)||(28751027-28751077)
chr5 (101-154)||(19806117-19806170)
chr5 (101-154)||(39468936-39468989)
chr5 (139-195)||(3075976-3076032)
chr5 (63-154)||(9352903-9352995)
chr5 (55-93)||(11181412-11181450)
chr5 (105-154)||(30182302-30182352)
chr5 (128-177)||(15464935-15464984)
chr5 (152-181)||(32636598-32636627)
chr5 (63-115)||(24136336-24136388)
[»] chr2 (30 HSPs)
chr2 (48-181)||(39284554-39284688)
chr2 (67-181)||(29867556-29867671)
chr2 (63-154)||(2837248-2837339)
chr2 (55-154)||(36318413-36318513)
chr2 (31-212)||(35447436-35447627)
chr2 (67-154)||(36988479-36988567)
chr2 (67-174)||(6595378-6595486)
chr2 (42-152)||(17863844-17863955)
chr2 (48-154)||(33528177-33528284)
chr2 (48-114)||(45726464-45726530)
chr2 (67-154)||(34389287-34389375)
chr2 (68-154)||(45099432-45099519)
chr2 (67-154)||(20522659-20522746)
chr2 (48-154)||(14698563-14698669)
chr2 (48-153)||(23078025-23078131)
chr2 (48-115)||(13569807-13569874)
chr2 (48-154)||(21630382-21630489)
chr2 (48-115)||(8389703-8389768)
chr2 (101-154)||(2334821-2334875)
chr2 (101-154)||(4503536-4503590)
chr2 (67-115)||(10706825-10706873)
chr2 (63-154)||(28258746-28258838)
chr2 (67-154)||(39483313-39483401)
chr2 (101-154)||(5723658-5723712)
chr2 (85-154)||(17865614-17865684)
chr2 (147-197)||(33118517-33118567)
chr2 (101-154)||(36206069-36206123)
chr2 (76-113)||(2334767-2334804)
chr2 (63-115)||(25410118-25410170)
chr2 (63-115)||(30833017-30833069)
[»] scaffold0066 (1 HSPs)
scaffold0066 (53-154)||(20819-20920)
[»] chr6 (28 HSPs)
chr6 (52-212)||(21593110-21593282)
chr6 (68-154)||(9183414-9183500)
chr6 (68-228)||(3809245-3809414)
chr6 (63-154)||(22964135-22964226)
chr6 (63-154)||(23824167-23824258)
chr6 (76-153)||(603642-603719)
chr6 (48-154)||(31979954-31980061)
chr6 (48-115)||(31086025-31086092)
chr6 (71-154)||(5407312-5407396)
chr6 (71-154)||(5411637-5411721)
chr6 (68-147)||(17759415-17759494)
chr6 (50-154)||(5017050-5017156)
chr6 (91-154)||(24714809-24714872)
chr6 (81-154)||(26661422-26661495)
chr6 (81-154)||(26767393-26767466)
chr6 (101-154)||(5413852-5413906)
chr6 (76-154)||(5571846-5571924)
chr6 (88-154)||(24435566-24435632)
chr6 (101-154)||(30834941-30834995)
chr6 (101-154)||(33160758-33160812)
chr6 (63-154)||(5757047-5757139)
chr6 (63-150)||(21272558-21272645)
chr6 (101-154)||(5406602-5406656)
chr6 (101-154)||(5410927-5410981)
chr6 (101-154)||(16452844-16452898)
chr6 (67-154)||(18234520-18234608)
chr6 (63-115)||(22709497-22709549)
chr6 (63-154)||(23896769-23896861)
[»] scaffold0176 (1 HSPs)
scaffold0176 (55-154)||(17668-17767)
[»] scaffold0002 (1 HSPs)
scaffold0002 (76-154)||(434217-434297)
[»] scaffold0466 (2 HSPs)
scaffold0466 (147-228)||(6878-6960)
scaffold0466 (48-93)||(6788-6833)
[»] scaffold0087 (1 HSPs)
scaffold0087 (63-154)||(36401-36493)
[»] scaffold0016 (1 HSPs)
scaffold0016 (67-154)||(114263-114350)
[»] scaffold0098 (1 HSPs)
scaffold0098 (60-154)||(45635-45730)
[»] scaffold0006 (2 HSPs)
scaffold0006 (76-154)||(2930-3009)
scaffold0006 (63-154)||(132848-132940)
[»] scaffold0036 (1 HSPs)
scaffold0036 (48-114)||(86066-86131)
[»] scaffold0510 (1 HSPs)
scaffold0510 (63-154)||(1179-1271)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6096375 - 6096136
Alignment:
Q  1 aaaatgattttggagaaagtgaagaaacgtcgtgtcatgatttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  6096375 aaaatgattttggagaaagtgaagaaacgtcgtgtcacgaattttgaaggcactgagcatggtttgcagggtgtccaattgtgacacgattttgggaaaa 6096276  T
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc------------gtacgcaccaaacgtgtcacgatttgggaaatcatgat 188  Q
    ||||||||||||||||||||| ||| ||| ||||||| ||||||||||||            |||||||||||| ||||||||||||||||||||||||     
T  6096275 cgtgacacgattttcggcttattggacaaattttcaggataaggttggtcgtaccttgggtcgtacgcaccaaatgtgtcacgatttgggaaatcatgac 6096176  T
Q  189 acgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    ||||||||||| || |||||||||| ||||||||||||||    
T  6096175 acgattttgtcaggatatgaacacagtatatgcattcttt 6096136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 51398499 - 51398617
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaa 162  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||  |||||||||||| || ||| ||||||||||||||||||||    
T  51398499 tttgcagggtgtccaattgtgacacgattttgggaaaacgtgacacaattttcggtttgttgggcaagtttttaggatatggttggtcgtacgcaccaaa 51398598  T
Q  163 cgtgtcacgatttgggaaa 181  Q
    |||||||||||||||||||    
T  51398599 cgtgtcacgatttgggaaa 51398617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 76 - 228
Target Start/End: Original strand, 36018330 - 36018482
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgattt 175  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||| || ||||||||||||||||||||||| | |||||||||||    
T  36018330 caatcgtgacacgattttgggaaaacgtgacacaattttcggcttgctgggcacgtttttaggataaggttggtcgtacgcaccaaccatgtcacgattt 36018429  T
Q  176 gggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    |||||| | ||| ||||||||| |||| | ||||||| | |||||||||||||    
T  36018430 gggaaaacgtgacacgattttgcccggatctgaacactacatatgcattcttt 36018482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 31340771 - 31340577
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttgg-aaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||||| ||| ||||||||||||| |||||| |||||||| |||||| ||||||||||||||||||  ||||||||||||||| ||||||||    
T  31340771 aggcagtgagcatggttttcagggtgtccaatcgtgacatgattttgggaaaaacatgacacgattttcggcttgttgggcaagttttcaggataaggtt 31340672  T
Q  147 ggtc------------gtacgcaccaaacgtgtcacga-tttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    ||||            |||||||||||||||| ||||| ||||||||||| ||| | |||||||||| | | |||||||||||||||||||||||    
T  31340671 ggtcgtaccttgggtcgtacgcaccaaacgtgacacgattttgggaaatcgtgacatgattttgtccagatctgaacacaatatatgcattcttt 31340577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 29812720 - 29812827
Alignment:
Q  48 aggcagtgagcatgattt-gcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||| ||||||||    
T  29812720 aggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttttgtcttgctgggcaagttttcaggataaggtt 29812819  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  29812820 ggtcgtac 29812827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 34490687 - 34490778
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  34490687 tttgcagggtatccaatcgtgacacgattttggaaaaacgtgacacgattttcggcttattgggcaagttttcaggataaggttggttgtac 34490778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 228
Target Start/End: Complemental strand, 43402490 - 43402326
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt------------ggtcgtacgcaccaaac 163  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||            |||||||||||||||||    
T  43402490 caatcgtgacacgattttggagaaacgtgacacgattttcggcttgctgggcaagttttcaggataaggttggttgtatcttgggtcgtacgcaccaaac 43402391  T
Q  164 gtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    |||||||||||||||||||  ||| | |||||||| | | | |||||| ||||||||||||||||    
T  43402390 gtgtcacgatttgggaaattgtgacatgattttgttctgatctgaacataatatatgcattcttt 43402326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 228
Target Start/End: Complemental strand, 43404433 - 43404269
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac------------gcaccaaac 163  Q
    |||| |||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||            |||||||||    
T  43404433 caatcgtgacacgattttggggaaacgtgacacgattttcggcttgctgagcaagttttcaggataaggtcggtcgtaccttgggtcgtacgcaccaaac 43404334  T
Q  164 gtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    |||||||||||||||||||| ||| |||||||| ||||| | ||||||||||||||| |||||||    
T  43404333 gtgtcacgatttgggaaatcgtgacacgattttctccggatctgaacacaatatatgtattcttt 43404269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 49200196 - 49200073
Alignment:
Q  31 cgtgtcatgatttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag 130  Q
    ||||||| ||||||  || || ||||||||| ||||||||||||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||| |    
T  49200196 cgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgatgttggggaaacgtgacacgattttcggcttgctgggcatg 49200097  T
Q  131 ttttcagaataaggttggtcgtac 154  Q
    ||||||| ||||||||||||||||    
T  49200096 ttttcaggataaggttggtcgtac 49200073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 55302692 - 55302517
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 147  Q
    |||||||||||||  ||| |||||||| |||| |||||||||||| |||||| ||||| |||||||||||||| |||||||||||||||| |||||||||    
T  55302692 aggcagtgagcattgttttcagggtgttcaatcgtgacacgatttgggaaaa-cgtgatacgattttcggcttgctgggcaagttttcaggataaggttg 55302594  T
Q  148 gtc------------gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 212  Q
    |||            ||||||||||||||||||||||||||||||||| ||| || ||||||||||| | |||||||    
T  55302593 gtcgtaccttgggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacacaattttgtccggatctgaacac 55302517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 4569391 - 4569497
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 147  Q
    |||||||| ||||| |||  |||||||||||| |||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  4569391 aggcagtgcgcatggtttttagggtgtccaatcgtgacatgattttgggaaaacgtgacacgattttcggcttgctgggcaagttttcaggataaggttg 4569490  T
Q  148 gtcgtac 154  Q
    |||||||    
T  4569491 gtcgtac 4569497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 228
Target Start/End: Original strand, 40912800 - 40912969
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt------------acgcac 158  Q
    |||| |||| |||| || ||||||| ||||||||||||||||||||||||  ||||||||||||| | |||||| |||||||            ||||||    
T  40912800 gtgttcaatcgtgatacaattttgggaaaacgtgacacgattttcggcttgttgggcaagttttctggataaggctggtcgtatcttggatcgtacgcac 40912899  T
Q  159 caaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    ||||||||||||||||||||||||||||| |||||||||||||| | ||||||| || || |||||||||    
T  40912900 caaacgtgtcacgatttgggaaatcatgacacgattttgtccggatctgaacactatgtaagcattcttt 40912969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 46173173 - 46173279
Alignment:
Q  47 aaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 146  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| |||||||| || ||||||  |||||| |||||||| ||||||||    
T  46173173 aaggcagtgagcatggtttgcagggtgtccaatcgtgacacgattttgggaaaacatgacacga-ttccggcttgttgggcacgttttcaggataaggtt 46173271  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  46173272 ggtcgtac 46173279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 54593144 - 54593305
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt- 146  Q
    |||||||||||||| ||| || ||| | |||| ||||| | ||||||| |||||||||||||||||||  ||| ||||||| |||||||| ||||||||     
T  54593144 aggcagtgagcatggttttcatggtattcaatcgtgactcaattttgggaaaacgtgacacgattttcaacttgctgggcacgttttcaggataaggttg 54593243  T
Q  147 -----------ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
               ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54593244 gtcgtacattgggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgacacgattttg 54593305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 44332001 - 44331851
Alignment:
Q  9 tttggagaaagtgaagaaacgt-----cgtgtcatgatttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgt 103  Q
    |||||||||||||||||| |||     ||||||| |||||   || || ||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  44332001 tttggagaaagtgaagaatcgtgtcaccgtgtcacgatttcgcaatgccgtgagtatgttttgcagggtgtccaatcgtgacacgattttggaaaaacgt 44331902  T
Q  104 gacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||| ||||| ||||| | |||||||  |||| ||| |||||||    
T  44331901 gacacgatttttggcttcctgggtacgttttcaagataaagttagtcgtac 44331851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 5236944 - 5236861
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||    
T  5236944 gtgtccaatcgtgacacaattttgggaaaacgtgacacgattttcggcttgctgggaaagttttcaggataagtttggtcgtac 5236861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 29810541 - 29810687
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt------------ggtc 150  Q
    ||||||||||||||||| ||||||||||||| |||||||||  ||| ||||| ||||| |||| ||| ||||||| ||||||||            ||||    
T  29810541 tttgcagggtgtccaatcgtgacacgattttagaaaaacgtagcacaatttttggcttgctggacaaattttcaggataaggttggtcgtaccttgggtc 29810640  T
Q  151 gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||||||||||||||||||||| | ||| |||||||||    
T  29810641 gtacgcaccaaacgtgtcacgatttgggaaaacgtgacacgattttg 29810687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 44331232 - 44331333
Alignment:
Q  53 gtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 152  Q
    ||||| ||| ||||| |||||| |||| ||||||||||||||| |||| ||||||||||||| ||||| ||||| | |||||||| ||||||||||||||    
T  44331232 gtgagtatgttttgctgggtgttcaatcgtgacacgattttgggaaaaagtgacacgatttttggcttgctgggtacgttttcaggataaggttggtcgt 44331331  T
Q  153 ac 154  Q
    ||    
T  44331332 ac 44331333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 5258630 - 5258548
Alignment:
Q  73 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  5258630 gtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 5258548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 7761941 - 7762028
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||| ||||||| ||||||||||||||| ||| |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  7761941 cagggcgtccaatcgtgacacgattttgggaaa-cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 7762028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 7764128 - 7764216
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||  |||||||| |||| || ||||||||||||||||    
T  7764128 cagggcgtccaatcgtgacacgattttgggaaaacgtgacacgatttttggcttgttgggcaagatttttaggataaggttggtcgtac 7764216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 45094840 - 45094928
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||| ||||||| ||||||| ||||||| ||| |||||||||||||| |||||  |||||||| ||||||| ||||||||||||||||    
T  45094840 cagggcgtccaatcgtgacacaattttgggaaatcgtgacacgatttttggcttgttgggcaagattttcaggataaggttggtcgtac 45094928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 36029637 - 36029530
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggtt 146  Q
    |||||| || |||| |||||||||||   ||| ||| |||||||||||||||||||||||||||||||   ||| ||||| | |||||||| ||||||||    
T  36029637 aggcagcgaacatggtttgcagggtgcttaatcgtgtcacgattttggaaaaacgtgacacgattttcaaacttgctgggtacgttttcaggataaggtt 36029538  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  36029537 ggtcgtac 36029530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 3393289 - 3393370
Alignment:
Q  73 gtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| ||||| ||||||||| ||||||| |||| |||||||||||    
T  3393289 gtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgctgggcaagattttcaggataa-gttggtcgtac 3393370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 16264887 - 16264785
Alignment:
Q  53 gtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcg 151  Q
    ||||||||| |||||||||||  |||| ||| ||||||||||| |||||||||||||||||||   ||  ||||| | |||||||| |||||||||||||    
T  16264887 gtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaactagctgggtacgttttcaggataaggttggtcg 16264788  T
Q  152 tac 154  Q
    |||    
T  16264787 tac 16264785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 40592353 - 40592431
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||| ||| ||||||||||| |||||||||||||||||||  ||| |||| || |||||||| ||||||||||||||||    
T  40592353 caatcgtgtcacgattttgggaaaacgtgacacgattttcaacttgctggacacgttttcaggataaggttggtcgtac 40592431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 40734156 - 40734221
Alignment:
Q  50 gcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||||||||||| |||||||||||  |||| ||| ||||||||||| |||||||||||||||||||    
T  40734156 gcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 40734221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 40735087 - 40735152
Alignment:
Q  50 gcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||||||||||| |||||||||||  |||| ||| ||||||||||| |||||||||||||||||||    
T  40735087 gcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 40735152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 8370020 - 8370099
Alignment:
Q  35 tcatgatttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||| | || |||||||||| |||||||||||  |||| ||| ||||||||||| |||||||||||||||||||    
T  8370020 tcatgatttttca-ggtagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 8370099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 23410833 - 23410774
Alignment:
Q  55 gagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgatttt 114  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||||||||| ||| |||||    
T  23410833 gagcatgttttgcagggtgtccaatcgtgacacaattttggaaaaacgtgtcacaatttt 23410774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 27027250 - 27027183
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||||||||||||| ||||||| |||  |||| ||| ||||||||||| |||||||||||||||||||    
T  27027250 aggcagtgagcatggtttgcagagtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 27027183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 27038585 - 27038478
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||||| |||||||||||  ||||  || ||||||||||| |||| ||||||||||||||   |||  |||| | |||||||| ||||||||    
T  27038585 aggcagtgagcatggtttgcagggtgctcaatcatgtcacgattttgggaaaatgtgacacgattttcaaacttgttgggtatgttttcaggataaggtt 27038486  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  27038485 ggtcgtac 27038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 35926034 - 35925927
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||||| |||||||||||  |||| ||| ||||| ||||  |||||||||||||||||||   |||  |||| | |||||||| ||||||||    
T  35926034 aggcagtgagcatggtttgcagggtgctcaatcgtgtcacgagtttgagaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggtt 35925935  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  35925934 ggtcgtac 35925927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 9636620 - 9636532
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||| ||||||| |||||| |||||||| ||| | |||||||||||| |||||  ||| |||| ||||||| ||||||||||||||||    
T  9636620 cagggcgtccaatcgtgacatgattttgggaaatcatgacacgatttttggcttgatggacaagattttcaggataaggttggtcgtac 9636532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 47923445 - 47923553
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaag-ttttcagaataaggt 145  Q
    |||||||||||||| |||||||||||  |||| ||| |||  |||||| |||||||||||||||||||   ||| ||||| | | ||||||| |||||||    
T  47923445 aggcagtgagcatggtttgcagggtgctcaatcgtgtcacatttttgggaaaacgtgacacgattttcaaacttgctgggtacgtttttcaggataaggt 47923544  T
Q  146 tggtcgtac 154  Q
    |||||||||    
T  47923545 tggtcgtac 47923553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 21711745 - 21711678
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||||||||||||| ||| |||||||  |||| ||| ||||||||||| |||||||||||| ||||||    
T  21711745 aggcagtgagcatggttttcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacaattttc 21711678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 30709342 - 30709405
Alignment:
Q  52 agtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||  |||||||||||| ||||||    
T  30709342 agtgagcatggtttgcagggtgttcaatcgtgtcacgattttgagaaaacgtgacacaattttc 30709405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 29812832 - 29812882
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||||||||||||||||||||| ||| | ||| |||||||||    
T  29812832 ggtcgtacgcaccaaacgtgtcacgatttggaaaaacgtgacacgattttg 29812882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 37726203 - 37726111
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||| ||||||||||||||   || |||||||||||||||   |||  |||  |||||||||| ||||||||||||||||    
T  37726203 tttgcagggtgtcaaatcgtgacacgattttgtggaatcgtgacacgattttcaaacttgttggttaagttttcaggataaggttggtcgtac 37726111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 33386233 - 33386324
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgta 153  Q
    ||||||||||| | ||| ||||||||||||||   || |||||||||||||||   ||| ||||  |||||||||| |||||||||||||||    
T  33386233 tttgcagggtgccaaatcgtgacacgattttgtggaatcgtgacacgattttcaaacttgctggttaagttttcaggataaggttggtcgta 33386324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 49200046 - 49200007
Alignment:
Q  189 acgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  49200046 acgattttgtccggatctgaacacaatatatgcattcttt 49200007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 5260781 - 5260727
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| |||||  |||||||| ||||||| ||||||||||||||||    
T  5260781 cgtgacacgatttttggcttgttgggcaagattttcaggataaggttggtcgtac 5260727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 8127154 - 8127068
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgta 153  Q
    |||||||  |||| ||| ||||||||||| |||  ||||||||||||||  ||| || || | |||||||| |||||||||||||||    
T  8127154 cagggtgctcaatcgtgtcacgattttgggaaagtgtgacacgattttcaacttgctaggtacgttttcaggataaggttggtcgta 8127068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 30709451 - 30709501
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||||| ||||||||||||||| ||| | ||| |||||||||    
T  30709451 ggtcgtacgcaccaatcgtgtcacgatttggaaaaacgtgacacgattttg 30709501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 4569502 - 4569583
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    ||||||||||||||| ||||||||| ||  ||||| | ||| |||||||||  ||| | |||||| |||||| |||||||||    
T  4569502 ggtcgtacgcaccaaccgtgtcacggttgtggaaaacgtgacacgattttgctcggatttgaacaaaatataagcattcttt 4569583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 24128212 - 24128245
Alignment:
Q  81 gtgacacgattttggaaaaacgtgacacgatttt 114  Q
    |||||||||||||| |||||||||||||||||||    
T  24128212 gtgacacgattttgtaaaaacgtgacacgatttt 24128245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 1735847 - 1735914
Alignment:
Q  48 aggcagtgagcatga-tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||||||  ||| |||||||  |||| ||| ||||||||||| |||||||||||||||||||    
T  1735847 aggcagtgagcatggcttttcagggtgctcaatcgtg-cacgattttgggaaaacgtgacacgattttc 1735914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 34490783 - 34490811
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgattt 175  Q
    |||||||||||||||||||||||||||||    
T  34490783 ggtcgtacgcaccaaacgtgtcacgattt 34490811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 39032117 - 39032205
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||  |||| ||| ||||||||||| |||| ||||||||||||||   ||| ||||| | |||||||| |||| |||||||||||    
T  39032117 cagggtgctcaatcgtgtcacgattttgggaaaatgtgacacgattttcaaacttgctgggtacgttttcaggataaagttggtcgtac 39032205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 10981 - 11190
Alignment:
Q  31 cgtgtcatgatttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag 130  Q
    ||||||| ||||||  || || ||||||||| ||||||||||||||||| |||||||||||||||  ||| |||||||||||||||| || |||||||||    
T  10981 cgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaatgtgacacgattttcggtttgctgggcaag 11080  T
Q  131 ttttcagaataaggtt------------ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatata 218  Q
    ||||||| ||||||||            ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||    
T  11081 ttttcaggataaggttggtcgtacattgggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacacgattttgtccggttctgaacacaatata 11180  T
Q  219 tgcattcttt 228  Q
    ||||||||||    
T  11181 tgcattcttt 11190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 53)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 6655379 - 6655588
Alignment:
Q  31 cgtgtcatgatttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag 130  Q
    ||||||| ||||||  || || ||||||||| ||||||||||||||||| |||||||||||||||  ||| |||||||||||||||| || |||||||||    
T  6655379 cgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaatgtgacacgattttcggtttgctgggcaag 6655478  T
Q  131 ttttcagaataaggtt------------ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatata 218  Q
    ||||||| ||||||||            ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||    
T  6655479 ttttcaggataaggttggtcgtacattgggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacacgattttgtccggttctgaacacaatata 6655578  T
Q  219 tgcattcttt 228  Q
    ||||||||||    
T  6655579 tgcattcttt 6655588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 2209175 - 2209340
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaa 162  Q
    ||||||| ||| ||||| |||||||||||||||  |||||||||||||||||||| || || ||||||||||||| ||||||||||||||||||||||||    
T  2209175 tttgcagagtgcccaatcgtgacacgattttggggaaacgtgacacgattttcggtttgctaggcaagttttcaggataaggttggtcgtacgcaccaaa 2209274  T
Q  163 cgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    || |||||||||||||||||| ||| |  |||||||| |  | ||||||||||||| |||||||||    
T  2209275 cgcgtcacgatttgggaaatcgtgacaaaattttgtctgaatctgaacacaatataagcattcttt 2209340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 54882465 - 54882586
Alignment:
Q  33 tgtcatgatttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagtt 132  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||  ||| || |||    
T  54882465 tgtcacgatttttgaaggcagtgagcatggtttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcggcttgttggacacgtt 54882564  T
Q  133 ttcagaataaggttggtcgtac 154  Q
    ||||| ||||||||| ||||||    
T  54882565 ttcaggataaggttgatcgtac 54882586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 63 - 197
Target Start/End: Complemental strand, 26176119 - 26175985
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaa 162  Q
    ||||||||||| ||||  ||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  26176119 tttgcagggtgcccaaccgtgacacaattttgggaaaacgtgacacgattttcggcttgatgggcaagttttcaggataaggttggtcgtacgcaccaaa 26176020  T
Q  163 cgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||| ||||| | ||| | ||| |||||||||    
T  26176019 cgtgtcatgatttagcaaaacgtgacacgattttg 26175985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 71 - 228
Target Start/End: Original strand, 40630447 - 40630616
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac------------gcac 158  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||| |||| || ||||  ||||||||||||||||||||||||            ||||    
T  40630447 gtgtccaatcgtgtcacgattttgggaaaacgtgacacgattttcagcttgctaggcacattttcagaataaggttggtcgtaccttgggtcatatgcac 40630546  T
Q  159 caaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    ||||||||||||||||||||||||| ||| |||||||||||||| | |||||| ||||||||||||||||    
T  40630547 caaacgtgtcacgatttgggaaatcgtgacacgattttgtccggatctgaacataatatatgcattcttt 40630616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 50674551 - 50674382
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggt------------cgtacgcac 158  Q
    ||||||||| |||  |||||||||| ||||||||||| ||||||| |||| ||||||| |||||||| |||||||||||            |||||||||    
T  50674551 gtgtccaatcgtgttacgattttgggaaaacgtgacatgattttcagcttgctgggcacgttttcaggataaggttggttgtaccttgggtcgtacgcac 50674452  T
Q  159 caaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    ||||||||||||||||||||||||||||| || ||||||||||| | |||||||||||||||||||||||    
T  50674451 caaacgtgtcacgatttgggaaatcatgacacaattttgtccggatctgaacacaatatatgcattcttt 50674382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 26363725 - 26363881
Alignment:
Q  68 agggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt------------ggtcgtacg 155  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||            |||||||||    
T  26363725 agggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcggcttgctgagcaagttttcaggataaggttggtcataccttgggtcgtacg 26363824  T
Q  156 caccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 212  Q
    ||||||||||||||| |||||||||||| ||| |||||||||||||| | |||||||    
T  26363825 caccaaacgtgtcacaatttgggaaatcgtgacacgattttgtccggatctgaacac 26363881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 35661902 - 35662028
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcac 170  Q
    ||||||||| ||||||||||||||| |||| ||| |||||||||||||||  |||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  35661902 gtgtccaatcgtgacacgattttgggaaaatgtgtcacgattttcggcttgttgggcacgttttcaggataaggttggtcgtacgcaccaaccgtgtcac 35662001  T
Q  171 gatttgggaaatcatgatacgattttg 197  Q
    ||||||| ||| | |||||| ||||||    
T  35662002 gatttggcaaaacgtgatacaattttg 35662028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 9927971 - 9927867
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 147  Q
    ||||||||| |||| |||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||| |||| ||||||||||| |||||||||    
T  9927971 aggcagtgaacatgttttgcagggtgttcaatcgtgacacgattttgggaaaatgtgacacgattttcggcttgctggacaagttttcaggataaggttg 9927872  T
Q  148 gtcgt 152  Q
    |||||    
T  9927871 gtcgt 9927867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 197
Target Start/End: Complemental strand, 12740034 - 12739899
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaa 161  Q
    ||||||||||||||||  | ||||||||||||| ||||||| |||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  12740034 tttgcagggtgtccaaccgcgacacgattttgggaaaacgtaacacaatttttggcttgctgggcaagtttttcaggataaggttggtcgtacgcaccaa 12739935  T
Q  162 acgtgtcacgatttgggaaatcatgatacgattttg 197  Q
     ||||| | ||||| ||||| | ||| |||||||||    
T  12739934 tcgtgttatgattttggaaaacgtgacacgattttg 12739899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 12745926 - 12745820
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagtttt-cagaataaggtt 146  Q
    ||||||||||| || || |||||||||||||| |||||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  12745926 aggcagtgagc-tgtttggcagggtgtccaatcgtgacatgattttgggaaaacgtgacacgattttcggcttgctgggcaagttttccaggataaggtt 12745828  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  12745827 ggtcgtac 12745820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 197
Target Start/End: Complemental strand, 12748240 - 12748105
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaa 161  Q
    ||||||||||||||||  | ||||||||||||| ||||||| |||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  12748240 tttgcagggtgtccaaccgcgacacgattttgggaaaacgtaacacaatttttggcttgctgggcaagtttttcaggataaggttggtcgtacgcaccaa 12748141  T
Q  162 acgtgtcacgatttgggaaatcatgatacgattttg 197  Q
     ||||| | ||||| ||||| | ||| |||||||||    
T  12748140 tcgtgttatgattttggaaaacgtgacacgattttg 12748105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 56179116 - 56179001
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaaacgt 165  Q
    ||||| ||||||| ||||||||||||||| ||||||||||| |||||| ||||| ||||||||| ||||||| ||||||||||||||||||| ||| |||    
T  56179116 cagggcgtccaatcgtgacacgattttgggaaaacgtgacatgatttttggcttgctgggcaagattttcaggataaggttggtcgtacgcatcaatcgt 56179017  T
Q  166 gtcacgatttgggaaa 181  Q
    | |||||| |||||||    
T  56179016 gacacgatctgggaaa 56179001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 52095852 - 52095764
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  52095852 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 52095764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 5370567 - 5370452
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaaacgt 165  Q
    ||||| ||||||| ||||||||||||||| ||| |||||||||||||| ||||| |||||||||  |||||| ||||||||||||||||||| ||| |||    
T  5370567 cagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgctgggcaagactttcaggataaggttggtcgtacgcatcaatcgt 5370468  T
Q  166 gtcacgatttgggaaa 181  Q
    | ||||||| ||||||    
T  5370467 ggcacgattggggaaa 5370452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 34570891 - 34570763
Alignment:
Q  81 gtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt------------ggtcgtacgcaccaaacgtgtc 168  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||            ||||||||||||||||||||||    
T  34570891 gtgacacgattttgggaaaacgtgacacgattttcggcttgctggacaagttttcaggataaggttggttgtaccttgggtcgtacgcaccaaacgtgtc 34570792  T
Q  169 acgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||| | ||| |||||||||    
T  34570791 acgatttgggaaaacgtgacacgattttg 34570763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 46570237 - 46570148
Alignment:
Q  65 tgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||| ||||| |||||| |||||||| |||||||||||| ||||||||||| |||||||| ||||||| ||||||||||||||||    
T  46570237 tgcagggtgcccaatcgtgacaagattttgggaaaacgtgacacaattttcggcttgctgggcaaattttcaggataaggttggtcgtac 46570148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 37740299 - 37740390
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||| |||||| ||||| || |||||||||||| ||||||||||| |||||||||||| | |||||||||||||| ||||||||||||||||    
T  37740299 tttgtagggtgcccaatcgtaacacgattttgggaaaacgtgacatgattttcggcttgcagggcaagttttcaggataaggttggtcgtac 37740390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 5429345 - 5429444
Alignment:
Q  55 gagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||| ||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||| ||||  ||| |||||||||||  |||| ||||||||||    
T  5429345 gagcatgttttgcagggtgtctaatcgtgacacgattttgggaaaacgtgatacgattttcagcttgttggacaagttttcaggttaagattggtcgtac 5429444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 41639028 - 41639111
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||| |||| |||||||||||||||||||||||||||||||||||  |||  |||||| |||||||| ||||||||||||||||    
T  41639028 gtgttcaatcgtgacacgattttggaaaaacgtgacacgattttcaacttgttgggcacgttttcaggataaggttggtcgtac 41639111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 50263383 - 50263234
Alignment:
Q  90 ttttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc-----------gtacgcaccaaacgtgtcacgatttggg 178  Q
    |||||| ||||||| ||||||||||||||||  |||| |||||||||||||||||||||||           |||||||||||| |||||||| ||||||    
T  50263383 ttttgggaaaacgtaacacgattttcggcttggtgggtaagttttcagaataaggttggtcgtaccttggtcgtacgcaccaaatgtgtcacggtttggg 50263284  T
Q  179 aaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    ||||| ||| ||||||||||| || | |||||||| |||| ||| |||||    
T  50263283 aaatcgtgacacgattttgtctggatctgaacacattataagcactcttt 50263234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 25861585 - 25861693
Alignment:
Q  48 aggcagtgagcatga-tttgcagggtgtccaattgtgacacgattttgg-aaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggt 145  Q
    ||||||||||||||  ||| |||||||  |||| ||| ||||||||||| ||||||||||||||||||||  ||| ||||||| |||||||| |||||||    
T  25861585 aggcagtgagcatggcttttcagggtgctcaatcgtgtcacgattttgggaaaaacgtgacacgattttcaacttgctgggcatgttttcaggataaggt 25861684  T
Q  146 tggtcgtac 154  Q
    |||||||||    
T  25861685 tggtcgtac 25861693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 36314812 - 36314890
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||| ||| ||||||||||| |||||||||||||||||||  ||| ||||||| |||||||| ||||||||||||||||    
T  36314812 caatcgtgtcacgattttgggaaaacgtgacacgattttcaacttgctgggcacgttttcaggataaggttggtcgtac 36314890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 36329021 - 36329099
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||| ||| ||||||||||| |||||||||||||||||||  ||| ||||||| |||||||| ||||||||||||||||    
T  36329021 caatcgtgtcacgattttgggaaaacgtgacacgattttcaacttgctgggcacgttttcaggataaggttggtcgtac 36329099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 10047871 - 10047778
Alignment:
Q  85 cacgattttggaaaaacgtgacacgattttcgg-cttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgatttgg 177  Q
    ||||||||||| ||||||||||||||||| |   |||  |||| | |||||||| ||||||||||||||||||||||| |||||||||||||||    
T  10047871 cacgattttgggaaaacgtgacacgatttgcaaacttgatgggtacgttttcaggataaggttggtcgtacgcaccaatcgtgtcacgatttgg 10047778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 16628425 - 16628492
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||||||||||||| |||||||||||  |||| ||| ||||||||||| |||||||||||||||||||    
T  16628425 aggcagtgagcatgctttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 16628492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 27417656 - 27417513
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac------------gcac 158  Q
    |||| |||| ||||||||||||||| |||||||||||||||||||  |||  | |||| | |||||| ||||||||||||||||            |||     
T  27417656 gtgttcaatcgtgacacgattttgggaaaacgtgacacgattttcaacttgttcggcacggtttcaggataaggttggtcgtaccttgggtcgtacgcat 27417557  T
Q  159 caaacgtgtcacgatttgggaaatcatgatacgattttgtccgg 202  Q
    ||| ||||||||||||||||||||| ||| ||||||||||||||    
T  27417556 caaccgtgtcacgatttgggaaatcgtgacacgattttgtccgg 27417513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 48142763 - 48142844
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaaacgtgtcacgatttgggaaa 181  Q
    |||||||| ||||| |||||  |||||||| ||||||| ||||||||||||||||||| ||| |||| ||||||||||||||    
T  48142763 cgtgacacaatttttggcttgttgggcaagattttcaggataaggttggtcgtacgcatcaatcgtgacacgatttgggaaa 48142844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 54200363 - 54200310
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  54200363 cgtgacacgattttcggcttgctgggcaagttttcaagataaggttggtcgtac 54200310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 8689083 - 8689157
Alignment:
Q  81 gtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||||| |||||||||||||||||||   ||| ||||| | |||||||| ||||||||||||||||    
T  8689083 gtgacacgattttgggaaaacgtgacacgattttcaaacttgctgggtacgttttcaggataaggttggtcgtac 8689157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 3778090 - 3778025
Alignment:
Q  50 gcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||| ||||||| |||||||||||  |||| ||| ||||||||||| |||||||||||||||||||    
T  3778090 gcagcgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 3778025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 5148206 - 5148114
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||| ||||| ||| ||||||||||  ||||| |||||||||||||   ||||||||  | |||||||| ||||||||||||||||    
T  5148206 tttgcagggtgaccaatcgtggcacgattttgtgaaaacttgacacgattttcaaacttactggatacgttttcaggataaggttggtcgtac 5148114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 29254205 - 29254257
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgta 153  Q
    ||||||| ||||||||||||  ||||||||| |||||||||||||||||||||    
T  29254205 cgtgacatgattttcggcttgttgggcaagtattcagaataaggttggtcgta 29254257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 6742988 - 6743075
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||| | ||| ||| |||| |||||| ||||||||||||||||||   |||  |||||| |||||||| ||||||||||||||||    
T  6742988 cagggtgcctaatcgtggcacgtttttgggaaaacgtgacacgattttaaacttgttgggcacgttttcaggataaggttggtcgtac 6743075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 5429449 - 5429499
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||||| ||||||||||| ||||||| ||||| |||||||||    
T  5429449 ggtcgtacgcaccaatcgtgtcacgatgtgggaaaacatgacacgattttg 5429499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 9927860 - 9927826
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 181  Q
    |||||||||||||||||||||||||||||||||||    
T  9927860 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 9927826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 54867694 - 54867616
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||| ||| ||| ||||||| |||||||||||||||||||  ||| ||||||| |||||  | ||||||||||||||||    
T  54867694 caatcgtgtcacaattttgggaaaacgtgacacgattttcaacttgctgggcacgtttttcggataaggttggtcgtac 54867616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 55086027 - 55085934
Alignment:
Q  82 tgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataa-ggttggtcgtacgcaccaaacgtgtcacgattt 175  Q
    ||||||||||| |||||| |||| ||||||||| ||| | || |||| | |||||| |||| ||||||||||||||| ||| |||||||||||||    
T  55086027 tgacacgatttgggaaaa-cgtggcacgattttgggcatgcttggcacgctttcaggataaaggttggtcgtacgcatcaaccgtgtcacgattt 55085934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 3909760 - 3909860
Alignment:
Q  53 gtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 152  Q
    ||||||||| |||||| |||||| ||| ||||||||||||| | ||||| |||||| ||||| ||| |  | |||| ||||| || ||||||||||||||    
T  3909760 gtgagcatgttttgcacggtgtcaaatcgtgacacgatttttggaaaacatgacactatttttggcatgtttggcacgttttaag-ataaggttggtcgt 3909858  T
Q  153 ac 154  Q
    ||    
T  3909859 ac 3909860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 5268772 - 5268860
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||  |||| ||| ||||||||||| |||||||||||||||||||   |||  |||| | |||||||| ||||||||||||||||    
T  5268772 cagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggttggtcgtac 5268860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 13992783 - 13992731
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||| | ||| ||||||||||||||| ||| |||||||||||||||    
T  13992783 tttgcagggtgccaaatcgtgacacgattttgggaaatcgtgacacgattttc 13992731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 28468073 - 28468125
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||| | ||| |||||||||| |||||||| |||||||||||||||    
T  28468073 tttgcagggtgccaaatcgtgacacgatcttggaaaatcgtgacacgattttc 28468125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 29254265 - 29254313
Alignment:
Q  149 tcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||||||||||||||||||| ||| | ||| |||||||||    
T  29254265 tcgtacgcaccaaacgtgtcacgatttggaaaaacgtgacacgattttg 29254313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 3754685 - 3754736
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgatttt 114  Q
    |||||||||||| ||||||| ||||||||||  ||||| |||||||||||||    
T  3754685 tttgcagggtgtacaattgtaacacgattttaaaaaaatgtgacacgatttt 3754736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 5396272 - 5396311
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  5396272 caatcgtgtcacgattttggaaaaacgtgacacgattttc 5396311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 16622850 - 16622913
Alignment:
Q  52 agtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||||||||| ||||||  |||  |||||||| ||| ||||||| |||||||||||||||||||    
T  16622850 agtgagcatggtttgcattgtgctcaattgtgtcacaattttgggaaaacgtgacacgattttc 16622913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 36994241 - 36994324
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||| ||||||| ||||| | |||||||| ||| ||||||||||| || |||| ||||||   ||||||||| ||||||    
T  36994241 gtgtccaatcgtgacacaatttttggaaaacgtgtcacaattttcggcttgctaggcacgttttctagataaggttgatcgtac 36994324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 30000931 - 30000877
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| |||| || ||||||||||||||||    
T  30000931 cgtgacacgatttttggcttgctgggcaagatttttaggataaggttggtcgtac 30000877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 48142822 - 48142859
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattt 113  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  48142822 caatcgtgacacgatttgggaaaaacgtgacacgattt 48142859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 52083044 - 52083007
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattt 113  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  52083044 caatcgtgacacgatttgggaaaaacgtgacacgattt 52083007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 52094051 - 52094014
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattt 113  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  52094051 caatcgtgacacgatttgggaaaaacgtgacacgattt 52094014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 54882417 - 54882446
Alignment:
Q  1 aaaatgattttggagaaagtgaagaaacgt 30  Q
    ||||||||||||||||||||||||||||||    
T  54882417 aaaatgattttggagaaagtgaagaaacgt 54882446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 41639133 - 41639181
Alignment:
Q  164 gtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 212  Q
    |||||||||||||||||| ||||| ||||||||||| || | |||||||    
T  41639133 gtgtcacgatttgggaaaccatgacacgattttgtctggatctgaacac 41639181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 193034 - 193244
Alignment:
Q  30 tcgtgtcatgatttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaa 129  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||  |||||| ||||||||||||||||| || ||||||||||| ||||||||    
T  193034 tcgtgtcacgatttttgaaggcagtgagcatggtttgcagggtgtccaatcatgacacaattttggaaaaacgtgataccattttcggcttgctgggcaa 193133  T
Q  130 gttttcagaataaggtt------------ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatat 217  Q
    ||||| || ||||| ||            |||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| | ||||||||||||    
T  193134 gtttttaggataagattggtcgtaccttgggtcgtacgcaccaaacgtgtcgcgatttgggaaatcgtgacacgattttgtccggatctgaacacaatat 193233  T
Q  218 atgcattcttt 228  Q
    | | |||||||    
T  193234 aagtattcttt 193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 37033792 - 37033605
Alignment:
Q  53 gtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggt--- 149  Q
    ||||||||| ||||||||||||||||| ||||||||||||| |  |||| |||||||||||||| ||| | |||||||||||||| |||||||||||       
T  37033792 gtgagcatgttttgcagggtgtccaatcgtgacacgattttcgggaaacatgacacgattttcgccttgcagggcaagttttcaggataaggttggttgt 37033693  T
Q  150 ---------cgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
             |||||||||||||||||||||||||||||||||| ||| || ||||||||||| | ||||||||||||| |||||||||    
T  37033692 accttgggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacacaattttgtccggatctgaacacaatataagcattcttt 37033605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 11348174 - 11348265
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  11348174 tttgcagggtgtctaatcgtgacacgattttggagaaacgtgacacgattttcggcttgttgggcaagttttcaggataaggttggtcgtac 11348265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 37879604 - 37879513
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||  |||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||||| || ||||||||||||||||    
T  37879604 tttgcagggtgctcaatcgtgacacgattttggaaaaatgtgacacgattttcagcttactggacaagtttttaggataaggttggtcgtac 37879513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 44454840 - 44454923
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||  ||||||||||| ||||    
T  44454840 gtgtccaatcgtgacacgattttggggaaacgtgacacgattttcggcttgctgggcaagttttcaagataaggttggttgtac 44454923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 10924896 - 10924983
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc 150  Q
    ||||||||||  ||||| |||||||||||||||||||| |||||||||||||||||||  | |||||||||||| ||||| |||||||    
T  10924896 tttgcagggtacccaatcgtgacacgattttggaaaaatgtgacacgattttcggcttggtaggcaagttttcaaaataaagttggtc 10924983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 31658911 - 31659002
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||| |||||  |||| ||||| |||||||||| ||||||||||| ||||    
T  31658911 tttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacacaattttttgcttgctgggaaagttttcaggataaggttggttgtac 31659002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 49918022 - 49918109
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc 150  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||   ||| ||||||| |||||||| ||||||||||||    
T  49918022 tttgcagggtgcccaatcgtgacacgattttcgaaaaacgtgacacgatttttaacttgctgggcacgttttcaggataaggttggtc 49918109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 20762348 - 20762436
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||| ||||||| ||||||||||||||| ||| |||||||||||||| |||||  |||||||| ||||||| ||||||||||||||||    
T  20762348 cagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgttgggcaagattttcaggataaggttggtcgtac 20762436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 28220737 - 28220665
Alignment:
Q  49 ggcagtgagca-tgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggctt 120  Q
    ||||||||||| || ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  28220737 ggcagtgagcactgttttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacacgattttcggctt 28220665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 3189027 - 3189113
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgt 152  Q
    ||||| ||||||| ||||||| ||||||| |||||||||||||||||||| ||| ||||||||| |||| || ||||||||||||||    
T  3189027 cagggcgtccaatcgtgacacaattttgggaaaacgtgacacgattttcgacttgctgggcaagttttttaggataaggttggtcgt 3189113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 3197844 - 3197930
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgt 152  Q
    ||||| ||||||| ||||||| ||||||| |||||||||||||||||||| ||| ||||||||| |||| || ||||||||||||||    
T  3197844 cagggcgtccaatcgtgacacaattttgggaaaacgtgacacgattttcgacttgctgggcaagttttttaggataaggttggtcgt 3197930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 3206662 - 3206748
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgt 152  Q
    ||||| ||||||| ||||||| ||||||| |||||||||||||||||||| ||| ||||||||| |||| || ||||||||||||||    
T  3206662 cagggcgtccaatcgtgacacaattttgggaaaacgtgacacgattttcgacttgctgggcaagttttttaggataaggttggtcgt 3206748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 28223917 - 28223860
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggctt 120  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  28223917 tttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacacgattttcggctt 28223860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 3156540 - 3156631
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||| | ||| ||||||||||||||| ||||| | |||||||||| || || |||| || |||||||| ||||||||||||||||    
T  3156540 tttgcagggtgccaaatcgtgacacgattttgggaaaacataacacgatttttggtttgctggacacgttttcaggataaggttggtcgtac 3156631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 13547706 - 13547629
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcatt 224  Q
    ||||||||||||||| ||||||||||||||||||| ||| | ||||||||  |||| | ||||||| | |||||||||    
T  13547706 ggtcgtacgcaccaaccgtgtcacgatttgggaaaacataacacgattttacccggatctgaacactacatatgcatt 13547629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 13549617 - 13549540
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcatt 224  Q
    ||||||||||||||| ||||||||||||||||||| ||| | ||||||||  |||| | ||||||| | |||||||||    
T  13549617 ggtcgtacgcaccaaccgtgtcacgatttgggaaaacataacacgattttacccggatctgaacactacatatgcatt 13549540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 4553153 - 4553053
Alignment:
Q  53 gtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 152  Q
    |||| |||| |||||||||| |||||| ||||||||||||||  ||||||||| | |||||||| |||  | | || |||||||| |||||||| |||||    
T  4553153 gtgaacatgttttgcagggtatccaatcgtgacacgattttgagaaaacgtgatatgattttcgacttgtttgacacgttttcaggataaggttagtcgt 4553054  T
Q  153 a 153  Q
    |    
T  4553053 a 4553053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 30476905 - 30476797
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggt------------cgtacgcaccaaacgtgtcacgatttgggaaatcatgat 188  Q
    ||||||||||||||||| || |||||||||||||||  |||||||||||            ||||| |||||||||||||||||||||||||| | |||     
T  30476905 cgtgacacgattttcggtttgctgggcaagttttcaagataaggttggttgaaccttgggtcgtacacaccaaacgtgtcacgatttgggaaaacgtgac 30476806  T
Q  189 acgattttg 197  Q
    |||||||||    
T  30476805 acgattttg 30476797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 13316776 - 13316722
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  13316776 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 13316722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 29135762 - 29135814
Alignment:
Q  102 gtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||| ||||||| |||| ||||||| |||||||| ||||||||||||||||    
T  29135762 gtgacatgattttcagcttgctgggcacgttttcaggataaggttggtcgtac 29135814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 29652359 - 29652307
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaa 100  Q
    |||||||||||||| |||||||||||  |||| ||| ||||||||||||||||    
T  29652359 aggcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttggaaaaa 29652307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 37879486 - 37879447
Alignment:
Q  189 acgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  37879486 acgattttgtccggatctgaacacaatatatgcattcttt 37879447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 1833295 - 1833341
Alignment:
Q  151 gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    |||||||||||||||||||||||||| |||| | ||| |||||||||    
T  1833295 gtacgcaccaaacgtgtcacgatttgcgaaaacgtgacacgattttg 1833341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 177
Target Start/End: Original strand, 31659007 - 31659037
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgg 177  Q
    |||||||||||||||||||||||||||||||    
T  31659007 ggtcgtacgcaccaaacgtgtcacgatttgg 31659037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 192989 - 193018
Alignment:
Q  1 aaaatgattttggagaaagtgaagaaacgt 30  Q
    ||||||||||||||||||||||||||||||    
T  192989 aaaatgattttggagaaagtgaagaaacgt 193018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 1833194 - 1833251
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggctt 120  Q
    |||||||  |||||||| ||||||||||||||| ||||| | |||||||||| |||||    
T  1833194 tttgcagattgtccaatggtgacacgattttgggaaaacataacacgatttttggctt 1833251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 13547763 - 13547711
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||| |||||| |||| ||||||| ||||||| |||||||||||||||||    
T  13547763 cgtgacacaattttcagcttgctgggcacgttttca-aataaggttggtcgtac 13547711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 13549674 - 13549622
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||| |||||| |||| ||||||| ||||||| |||||||||||||||||    
T  13549674 cgtgacacaattttcagcttgctgggcacgttttca-aataaggttggtcgtac 13549622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 30476937 - 30476892
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgatttt 93  Q
    |||||||| ||||| ||||||||||||| ||| |||||||||||||    
T  30476937 aggcagtgggcatgttttgcagggtgtctaatcgtgacacgatttt 30476892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 13604191 - 13604283
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcgg-cttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||| ||||| ||| ||||||||||||||   || ||||||| |||||||   ||| ||||  |||||||||| ||||||||||||||||    
T  13604191 tttgcagtgtgtcaaatcgtgacacgattttgtggaatcgtgacatgattttcaaacttgctggttaagttttcaggataaggttggtcgtac 13604283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 19361008 - 19361060
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||| | ||| |||||||||| |||| ||| |||||||||||||||    
T  19361008 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttc 19361060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 19365864 - 19365916
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||| | ||| |||||||||| |||| ||| |||||||||||||||    
T  19365864 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttc 19365916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 26644469 - 26644521
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||||| |||||| ||| ||| ||||||||||  |||||||||||||||||||    
T  26644469 tttgcacggtgtcaaatcgtggcacgattttgtgaaaacgtgacacgattttc 26644521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 29135819 - 29135847
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgattt 175  Q
    |||||||||||||||||||||||||||||    
T  29135819 ggtcgtacgcaccaaacgtgtcacgattt 29135847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 31 - 228
Target Start/End: Complemental strand, 42435736 - 42435527
Alignment:
Q  31 cgtgtcatgatttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag 130  Q
    ||||||| ||||||  || || ||||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||| || ||||||    
T  42435736 cgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaacgtgacacgattttcgtcttgcttggcaag 42435637  T
Q  131 ttttcagaataaggttggtc------------gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatata 218  Q
    ||||||| ||||||||||||            ||||||||||||||||||||||||||||||||| ||| | |||||||||||| | |||||||||||||    
T  42435636 ttttcaggataaggttggtcgtaccttgggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacatgattttgtccggttctgaacacaatata 42435537  T
Q  219 tgcattcttt 228  Q
    ||||||||||    
T  42435536 tgcattcttt 42435527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 15212443 - 15212550
Alignment:
Q  48 aggcagtgagcatgattt-gcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  15212443 aggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcggcttgctgagcaagttttcaggataaggtt 15212542  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  15212543 ggtcgtac 15212550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 43036086 - 43036242
Alignment:
Q  53 gtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt------ 146  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||          
T  43036086 gtgagcatgttttgcagggtgtccaatcgtgacacgattttggaaaaacgtgacacgattttcgacttgttgggcaagttttcaggataaggttgatcgt 43036185  T
Q  147 ------ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
          | ||||||||||||||||||||||||||||||||| | ||| |||||||||    
T  43036186 accttggatcgtacgcaccaaacgtgtcacgatttgggaaaacgtgacacgattttg 43036242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 30143005 - 30143106
Alignment:
Q  53 gtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 152  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||| |||||||| || ||||||||||||||    
T  30143005 gtgagcatgttttgcagggtgtccaatcgtgacacgattttgggaaaatgtgacacgattttcggcttgctggacaagttttaaggataaggttggtcgt 30143104  T
Q  153 ac 154  Q
    ||    
T  30143105 ac 30143106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 154
Target Start/End: Original strand, 11383449 - 11383552
Alignment:
Q  51 cagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc 150  Q
    ||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| ||||||  ||||||||||||    
T  11383449 cagtgagcatggtttttagggtgtccaattgtgacacgattttgggaaaacgtgacacgattttcagcttgctgggcaaattttcaagataaggttggtc 11383548  T
Q  151 gtac 154  Q
    ||||    
T  11383549 gtac 11383552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 27810971 - 27811061
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgta 153  Q
    ||||||||||||||||| ||||||||||||||  |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  27810971 tttgcagggtgtccaatcgtgacacgattttgagaaaatgtgacacgattttcggcttgctgggcaagttttcaggataaggttggtcgta 27811061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 22975974 - 22976080
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 147  Q
    |||||||| ||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| || | ||||||||||| ||||||||     
T  22975974 aggcagtgggcatggttttcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcagcttgcttgacaagttttcaggataaggttt 22976073  T
Q  148 gtcgtac 154  Q
    |||||||    
T  22976074 gtcgtac 22976080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 4731335 - 4731422
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||| |||| || |||||||||||||| ||||||||||    
T  4731335 cagggtgtccaatcgtgacacgattttgggaaaacatgacatgattttcggcttgctggacacgttttcagaataagattggtcgtac 4731422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 1746710 - 1746622
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||| ||||||| ||||||||||||||| ||| |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  1746710 cagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 1746622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 12703126 - 12703043
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||| |||| ||  ||||| |||||| ||||||||||||||||    
T  12703126 gtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcagcttgctaagcaagctttcaggataaggttggtcgtac 12703043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 228
Target Start/End: Original strand, 4283039 - 4283178
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac------------gcaccaaacgtgtcacgatttgggaaatcatgat 188  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||            ||||||||||||| | ||||||||||||| |||     
T  4283039 cgtgacacgattttcggcttgctgggcaagttttcaggataaggttggtcgtaccttgggtcgtatgcaccaaacgtgttaggatttgggaaatcgtgac 4283138  T
Q  189 acgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    || ||||||| ||| | ||||||||||| | |||||||||    
T  4283139 accattttgttcggatctgaacacaatacaagcattcttt 4283178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 4743699 - 4743597
Alignment:
Q  53 gtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcg 151  Q
    ||||||||| |||| |||||||||||| ||||||||||||||   ||||||||||||||||||| ||| || |||| | ||||||| |||||||||||||    
T  4743699 gtgagcatgttttgaagggtgtccaatcgtgacacgattttgaggaaacgtgacacgattttcgacttgcttggcacgtttttcaggataaggttggtcg 4743600  T
Q  152 tac 154  Q
    |||    
T  4743599 tac 4743597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 31217933 - 31218021
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||  |||||||| |||| || ||||||||||||||||    
T  31217933 cagggcgtccaattgtgacacgattttgggaaatcgtgacacgatttttggcttgttgggcaagatttttaggataaggttggtcgtac 31218021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 4733502 - 4733555
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggctt 120  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||    
T  4733502 cagggtgttcaatcgtgacacgattttgggaaaacgtgacacgattttcggctt 4733555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 10014822 - 10014923
Alignment:
Q  53 gtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 152  Q
    ||||||||| ||| |||||| |||||| |||||||||||||||  || | |||||||||||| ||| | || |||| |||| ||| ||||||||||||||    
T  10014822 gtgagcatgtttttcagggtttccaatcgtgacacgattttgggcaatcatgacacgatttttggcatgcttggcacgtttacaggataaggttggtcgt 10014921  T
Q  153 ac 154  Q
    ||    
T  10014922 ac 10014923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 34254805 - 34254732
Alignment:
Q  82 tgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||| |||||||||||||| || || ||||||||| ||||||| ||||||||||||||||    
T  34254805 tgacacgattttgggaaatcgtgacacgatttttggattgctgggcaagattttcaggataaggttggtcgtac 34254732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 40221227 - 40221308
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 152  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||| ||||  ||| || |||||||| |||||||| |||||    
T  40221227 gtgtccaatcgtgtcacgattttgggaaaacgtgacacgattttcagcttgttggacacgttttcaggataaggtttgtcgt 40221308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 5702048 - 5702140
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||  |||| ||| |||||||||||||||||||||||||||||||   ||| ||||| |  ||||||| ||||||||||||||||    
T  5702048 tttgcagggtgctcaatcgtgtcacgattttggaaaaacgtgacacgattttcaaacttgctgggtacattttcaggataaggttggtcgtac 5702140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 34256996 - 34256908
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||| ||||||| ||||||||||||||| ||| |||||||||||||| ||||| ||| ||||| ||||||| ||||| ||||| ||||    
T  34256996 cagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgctgagcaagattttcaggataagattggttgtac 34256908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 42497891 - 42497979
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||| ||||||| ||||||||||||||| |||  ||||||||||| | ||||| ||||||||| ||||||| |||||||| |||||||    
T  42497891 cagggcgtccaatcgtgacacgattttgggaaattgtgacacgattattggcttgctgggcaagattttcaggataaggttagtcgtac 42497979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 1345895 - 1345775
Alignment:
Q  33 tgtcatgatttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagtt 132  Q
    ||||||||||||  || || | ||||||| | |||||||||| |||| ||||||||||||  |||||  ||||||| |||||| |||| || | || |||    
T  1345895 tgtcatgattttgcaatgccgagagcatgttctgcagggtgttcaatcgtgacacgatttgagaaaat-gtgacacaattttcagcttgcttgacacgtt 1345797  T
Q  133 ttcagaataaggttggtcgtac 154  Q
    ||||| ||||||||||||||||    
T  1345796 ttcaggataaggttggtcgtac 1345775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 19945831 - 19945743
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||| ||||||| ||||||||||||| | ||| |||||||||||||| |||||  |||| ||| ||||||| ||||||||| ||||||    
T  19945831 cagggcgtccaatcgtgacacgattttaggaaatcgtgacacgatttttggcttgttggggaagattttcaggataaggttgatcgtac 19945743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 33351812 - 33351888
Alignment:
Q  31 cgtgtcatgatttttgaaggcagtgagcatgattt-gcagggtgtccaattgtgacacgattttggaaaaacgtgaca 107  Q
    ||||||| ||||||| | |||||||| |||| ||| |||||||||||||| ||||||||||||||| ||||| |||||    
T  33351812 cgtgtcacgatttttta-ggcagtgaacatggttttgcagggtgtccaatcgtgacacgattttgggaaaacatgaca 33351888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 15212555 - 15212589
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 181  Q
    ||||||||||||||||||||||||||||| |||||    
T  15212555 ggtcgtacgcaccaaacgtgtcacgatttaggaaa 15212589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 17982363 - 17982417
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| |||| || ||||||||||||||||    
T  17982363 cgtgacacgatttttggcttgctgggcaagatttttaggataaggttggtcgtac 17982417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 30143111 - 30143161
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||||| ||||||||||||||| ||| | ||| |||||||||    
T  30143111 ggtcgtacgcaccaaccgtgtcacgatttggcaaaacgtgacacgattttg 30143161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 33351919 - 33351969
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    |||| |||||||||||||||||| ||||||||||| | ||| |||||||||    
T  33351919 ggtcatacgcaccaaacgtgtcatgatttgggaaaacgtgacacgattttg 33351969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 44303564 - 44303618
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| ||| ||| ||||||||||||||||    
T  44303564 cgtgacacgatttttggcttgctgggcaagatttccaggataaggttggtcgtac 44303618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 1261510 - 1261562
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||| | ||| |||||||||| |||| ||| |||||||||||||||    
T  1261510 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttc 1261562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 40221315 - 40221343
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgattt 175  Q
    |||||||||||||||||||||||||||||    
T  40221315 ggtcgtacgcaccaaacgtgtcacgattt 40221343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 81011 - 80819
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 147  Q
    |||||||||||||  ||| |||||| |||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  81011 aggcagtgagcattgttttcagggtatccaatcgtgacacgattttgggaaaacgtggcacgattttcggcttgctgggcaagttttcaggataaggttg 80912  T
Q  148 gtc------------gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    |||            ||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||| |||||||||    
T  80911 gtcgtaccttgggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacacgattttgtccggatctgaacacaatataagcattcttt 80819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 29608207 - 29608373
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgatttt-ggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaa 161  Q
    ||||||||||||||||| ||||||||||||| ||  ||| |||| || ||||||| |||  ||||||||||||||| |||||||||||||||||||||||    
T  29608207 tttgcagggtgtccaatcgtgacacgatttttggggaaaagtgatacaattttcgacttgttgggcaagttttcaggataaggttggtcgtacgcaccaa 29608306  T
Q  162 acgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    ||||||||| |||| ||||||||||| |||||||||||||| | ||||||||||||| |||||||||    
T  29608307 acgtgtcacaatttaggaaatcatgacacgattttgtccggatctgaacacaatataagcattcttt 29608373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 63 - 228
Target Start/End: Complemental strand, 6360625 - 6360448
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt------------ggtc 150  Q
    ||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||| |||| |||            ||||    
T  6360625 tttgcagggtgcccaattgtgacacgattttggggaaacgtgacacgattttcggcttgttgggcaagttttcaggataatgttggtcgtatcttgggtc 6360526  T
Q  151 gtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||||||| | |||||||| |||| |||||||||    
T  6360525 gtacgcaccaaacgtgtcacgatttgggaaattgtgacacgattttgtccggatctgaacacattataagcattcttt 6360448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 47674454 - 47674347
Alignment:
Q  48 aggcagtgagcatgattt-gcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  47674454 aggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcggcttgctgggcaagttttcaggataaggtt 47674355  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  47674354 ggtcgtac 47674347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 47676647 - 47676540
Alignment:
Q  48 aggcagtgagcatgattt-gcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  47676647 aggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcggcttgctgggcaagttttcaggataaggtt 47676548  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  47676547 ggtcgtac 47676540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 31733410 - 31733311
Alignment:
Q  98 aaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | ||| |||||||||    
T  31733410 aaacgtgacacaattttcggcttgctgggcaagttttcaggataaggttggtcgtacgcaccaaacgtgtaacgatttgggaaaacgtgacacgattttg 31733311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 14070350 - 14070182
Alignment:
Q  42 ttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaat 140  Q
    |||| ||||||||||||||| ||| |||||||| |||| ||||||||||||||| |||||||||||||||||||| ||| || |||||| ||||||  ||    
T  14070350 ttttcaaggcagtgagcatggttttcagggtgttcaatcgtgacacgattttgggaaaacgtgacacgattttcgacttgctaggcaagtttttcaagat 14070251  T
Q  141 aaggttggtcgtac------------gcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||||            ||||||||||||||||||||||||||| | ||| |||||||||    
T  14070250 aaggttggtcgtaccttgggtcgtatgcaccaaacgtgtcacgatttgggaaaacgtgacacgattttg 14070182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 14380378 - 14380210
Alignment:
Q  42 ttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaat 140  Q
    |||| ||||||||||||||| ||| |||||||| |||| ||||||||||||||| |||||||||||||||||||| ||| || |||||| ||||||  ||    
T  14380378 ttttcaaggcagtgagcatggttttcagggtgttcaatcgtgacacgattttgggaaaacgtgacacgattttcgacttgctaggcaagtttttcaagat 14380279  T
Q  141 aaggttggtcgtac------------gcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||||            ||||||||||||||||||||||||||| | ||| |||||||||    
T  14380278 aaggttggtcgtaccttgggtcgtatgcaccaaacgtgtcacgatttgggaaaacgtgacacgattttg 14380210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 27347581 - 27347687
Alignment:
Q  48 aggcagtgagca-tgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||| || ||||||||||| ||||| ||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||| ||||||||    
T  27347581 aggcagtgagcactgttttgcagggtgcccaatcgtgacacgattttgggaaaac-tgacatgattttcggcttgctgggcaagttttcaggataaggtt 27347679  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  27347680 ggtcgtac 27347687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 4585819 - 4585925
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 147  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||| |||||| |||||  |||| |||||||||  |||||||||    
T  4585819 aggcagtgagcatgttttgcagggtgtccaatcgtgacactattttgggaaaacgtgacaagatttttggcttgttgggtaagttttcaatataaggttg 4585918  T
Q  148 gtcgtac 154  Q
    |||||||    
T  4585919 gtcgtac 4585925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 23554716 - 23554804
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  23554716 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcgacttgctgggcaagtttttcaggataaggttggtcgtac 23554804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 18126318 - 18126408
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||  ||||||||||||||| |||| |||||||||||    
T  18126318 tttgcagggtgtccaatcgtg-cacgattttggaaaaacgtgatacgattttcggcttgttgggcaagttttcaggataatgttggtcgtac 18126408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 154
Target Start/End: Original strand, 2389735 - 2389838
Alignment:
Q  51 cagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc 150  Q
    ||||||||||| |||  |||||||||||| ||||||||||||||  |||| |||||||||||||| |||| ||||| | |||||||| ||||||||||||    
T  2389735 cagtgagcatggtttttagggtgtccaatcgtgacacgattttgagaaaatgtgacacgattttcagcttgctgggaacgttttcaggataaggttggtc 2389834  T
Q  151 gtac 154  Q
    ||||    
T  2389835 gtac 2389838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 32358564 - 32358388
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt- 146  Q
    |||||||||||||| ||| |||||| |||||| |||| |||||||||| |||||||||||| |||||| |||| ||||||| |||||||| |||| |||     
T  32358564 aggcagtgagcatggttttcagggtatccaatcgtgatacgattttgggaaaacgtgacacaattttcagcttgctgggcacgttttcaggataaagttg 32358465  T
Q  147 -----------ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 212  Q
               | ||||||||||||||||||||| ||||||| ||||  ||| |||||||||||||| | |||||||    
T  32358464 atcgtaccttggatcgtacgcaccaaacgtgtcatgatttggaaaattgtgacacgattttgtccggatctgaacac 32358388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 43863942 - 43864025
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| ||  | || |||||||||| ||||||||||||||||    
T  43863942 gtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcggtttgttaggaaagttttcaggataaggttggtcgtac 43864025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 48599933 - 48599860
Alignment:
Q  155 gcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    |||||||||||||||||||| |||||||||||| || ||||||||||  | |||||||||||||||||||||||    
T  48599933 gcaccaaacgtgtcacgattggggaaatcatgacacaattttgtccgaatctgaacacaatatatgcattcttt 48599860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 33331987 - 33332110
Alignment:
Q  31 cgtgtcatgatttttgaaggcagtgagcatgatttgc-agggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaa 129  Q
    ||||||| ||||||| | ||||||||||||| |||   ||||||  |||||||| |||||||||||||||||||||||||||||||  ||| |||||||     
T  33331987 cgtgtcacgatttttta-ggcagtgagcatggttttttagggtgctcaattgtgtcacgattttggaaaaacgtgacacgattttcaacttgctgggcac 33332085  T
Q  130 gttttcagaataaggttggtcgtac 154  Q
     ||||||  ||||||||||||||||    
T  33332086 attttcaagataaggttggtcgtac 33332110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 4539046 - 4538955
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||| |||||| | ||| ||||||||||||||| ||||||||||||||||||||| || ||  |||||||||||| | ||||||||||||||    
T  4539046 tttgaagggtgcctaatcgtgacacgattttgggaaaacgtgacacgattttcggtttgctaagcaagttttcaggacaaggttggtcgtac 4538955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 4796238 - 4796329
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||  |||| |||||||||||||||||||||||||||||||||||  |||  |||||| |||||||| |||  |||||||||||    
T  4796238 tttgcagggtgctcaatcgtgacacgattttggaaaaacgtgacacgattttcaacttgatgggcacgttttcaggatagagttggtcgtac 4796329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 19495646 - 19495735
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacga-ttttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||||||| ||||||| |||||||| ||||| |||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  19495646 cagggtgtccaatcgtgacacaattttgggaaaacgtgccacgattttttggcttgctgggcaagattttcaggataaggttggtcgtac 19495735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 4178451 - 4178539
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||| ||||||| ||||||||||||||| ||| |||||||||||||| |||||  | |||||| ||||||| ||||||||||||||||    
T  4178451 cagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttttggcttgttaggcaagattttcaggataaggttggtcgtac 4178539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 2361635 - 2361540
Alignment:
Q  81 gtgacacgattttggaaaaacgtgacacgatttt-cggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgattt 175  Q
    |||||||||||||||  ||||||||||| ||||| ||  || |||| ||| |||| || ||||||||||||||| |||||||||||||||||||||    
T  2361635 gtgacacgattttggggaaacgtgacacaatttttcgatttgctggacaaatttttaggataaggttggtcgtatgcaccaaacgtgtcacgattt 2361540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 2647288 - 2647357
Alignment:
Q  85 cacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||| ||||||||||| |||||||  ||| ||||||| |||||||| ||||||||||||||||    
T  2647288 cacgattttgggaaaacgtgacatgattttcaacttgctgggcacgttttcaggataaggttggtcgtac 2647357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 49092232 - 49092127
Alignment:
Q  51 cagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcg-gcttactgggcaag-ttttcagaataaggttgg 148  Q
    ||||||||||| |||||||||||  |||| ||| ||||||||||| |||| |||||||||||||||  ||| ||||| | | ||||||| ||||||||||    
T  49092232 cagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaatgtgacacgattttcgaacttgctgggtacgtttttcaggataaggttgg 49092133  T
Q  149 tcgtac 154  Q
    ||||||    
T  49092132 tcgtac 49092127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 2761759 - 2761651
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac------------gcaccaaacgtgtcacgatttgggaaatcatgat 188  Q
    ||||||||||||||| |||| |||||||||||||||| ||||| ||||||||||            ||||||||||||||||||||||||||| | |||     
T  2761759 cgtgacacgattttcagcttgctgggcaagttttcaggataagattggtcgtaccttgggtcgtacgcaccaaacgtgtcacgatttgggaaaacgtgac 2761660  T
Q  189 acgattttg 197  Q
    |||||||||    
T  2761659 acgattttg 2761651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 26416994 - 26417077
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||||||||||||||||  ||| |||||||||||||  | ||  ||| |||||||||||  |||||||||||||||    
T  26416994 gtgtccaattgtgacacgattttggggaaatgtgacacgatttttagtttgttggacaagttttcagggtaaggttggtcgtac 26417077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 48489103 - 48489190
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc 150  Q
    |||||||||||| |||  |||||||||||| || ||||||||||||| |||| ||||| ||||||| | || ||| ||||||||||||    
T  48489103 tttgcagggtgttcaaccgtgacacgatttagggaaaacgtgacacggtttttggcttgctgggcatgcttccaggataaggttggtc 48489190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 18126413 - 18126463
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    |||||||||||||||||||||||||||||| |||| | ||| |||||||||    
T  18126413 ggtcgtacgcaccaaacgtgtcacgatttgagaaaacgtgacacgattttg 18126463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 30026481 - 30026404
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||| |||||| ||||||||  |||||||||||||||||| |||| | ||||| | |||||| ||||||||||||||||    
T  30026481 caatcgtgacatgattttggggaaacgtgacacgattttcagcttgccgggcacg-tttcaggataaggttggtcgtac 30026404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 1113367 - 1113420
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||||||||| |  ||||||| ||||||| ||||||||||||||||    
T  1113367 cgtgacacgattttcggcctgatgggcaaattttcaggataaggttggtcgtac 1113420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 34311330 - 34311285
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgatttt 93  Q
    |||||||||||||| |||||||||||||||||  ||||||||||||    
T  34311330 aggcagtgagcatggtttgcagggtgtccaatcatgacacgatttt 34311285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 48599991 - 48599934
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggctt 120  Q
    |||||||||||  |||| ||||||||||| |||  |||||||||||||||||||||||    
T  48599991 tttgcagggtgcacaatcgtgacacgattatggggaaacgtgacacgattttcggctt 48599934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 79933 - 79826
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaag-ttttcagaataaggt 145  Q
    |||||||||||||| |||||||| ||  |||| ||| |||||||||||||||| |||||| |||||||   ||| ||||| | | ||||||| |||||||    
T  79933 aggcagtgagcatggtttgcagg-tgctcaatcgtgtcacgattttggaaaaatgtgacaagattttcaaacttgctgggtacgtttttcaggataaggt 79835  T
Q  146 tggtcgtac 154  Q
    |||||||||    
T  79834 tggtcgtac 79826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 21646547 - 21646495
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||| | ||| |||||||||| |||||||| |||||||||||||||    
T  21646547 tttgcagggtgccaaatcgtgacacgatcttggaaaatcgtgacacgattttc 21646495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 25767450 - 25767398
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||| | ||| ||||||||||||||| ||| |||||||||||||||    
T  25767450 tttgcagggtgccaaatcgtgacacgattttgggaaatcgtgacacgattttc 25767398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 2647362 - 2647412
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||||| |||||||||||||||  || | |||||||||||||    
T  2647362 ggtcgtacgcaccaatcgtgtcacgatttggacaaacgtgatacgattttg 2647412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 4585930 - 4585964
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 181  Q
    ||||||||||||||||| |||||||||||||||||    
T  4585930 ggtcgtacgcaccaaacatgtcacgatttgggaaa 4585964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 24515218 - 24515164
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||| ||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  24515218 cgtgacacaatttttggcttgctgggcaagattttcaggataaggttggtcgtac 24515164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 26417082 - 26417132
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||||| |||||||||||||||  |||| ||| |||||||||    
T  26417082 ggtcgtacgcaccaaccgtgtcacgatttggccaatcgtgacacgattttg 26417132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 27347692 - 27347726
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 181  Q
    ||||||||||||||||||||||||| |||||||||    
T  27347692 ggtcgtacgcaccaaacgtgtcacggtttgggaaa 27347726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 63 - 197
Target Start/End: Complemental strand, 42428913 - 42428779
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaa 162  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||    
T  42428913 tttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttttggcttgctgggcaagtttttaggataaggttggtcgtacgcaccaaa 42428814  T
Q  163 cgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||| ||||| | ||| |||||||||    
T  42428813 cgtgtcacgatttaggaaaacctgacacgattttg 42428779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 533492 - 533588
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||    
T  533492 cgtgacacggttttcggcttgctgggcaagttttcaggataaggttggtcgtacgcaccaaacgtgtcacgatttgggaaaacgtgacacgattttg 533588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 42426745 - 42426639
Alignment:
Q  49 ggcagtgagcatgattt-gcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 147  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||| || |||||||||||||||| |||||||||    
T  42426745 ggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacaattttcggtttgctgggcaagttttcaggataaggttg 42426646  T
Q  148 gtcgtac 154  Q
    |||||||    
T  42426645 gtcgtac 42426639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 27015083 - 27015162
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattct 226  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||    
T  27015083 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcgtgacacgattttgtccggatctgaacacaatatatgcattct 27015162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 30683395 - 30683268
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacgcaccaaacgtgtcac 170  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||| ||| |||| |||    
T  30683395 gtgtccaatcgtgacacaattttgggaaaacgtgacacgattttcgacttgctaggcaagttttcaggataaggttggtcgtacgcatcaatcgtgacac 30683296  T
Q  171 ga-tttgggaaatcatgatacgattttg 197  Q
     | ||||||||| | ||| |||||||||    
T  30683295 aattttgggaaaacgtgacacgattttg 30683268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 32636481 - 32636588
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggtt 146  Q
    ||||||||| |||| |||||| |||||||||| ||||||||||||||| |||||||| ||||||||||| ||| ||||||||| ||||||| ||||||||    
T  32636481 aggcagtgaacatgttttgcaaggtgtccaatcgtgacacgattttgggaaaacgtggcacgattttcgacttgctgggcaagtttttcaggataaggtt 32636580  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  32636581 ggtcgtac 32636588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 38746556 - 38746637
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||    
T  38746556 ggtcgtacgcaccaaacgtgtcacaatttgggaaatcatgacacgattttgttcggatctgaacacaatatatgcattcttt 38746637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 5057489 - 5057595
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 147  Q
    ||||| |||||||  ||| ||||||||||||| ||||||||||||||| |||||||||||| ||||||| |||  || |||||||||||| |||||||||    
T  5057489 aggcaatgagcatagttttcagggtgtccaatcgtgacacgattttggtaaaacgtgacacaattttcgacttgttgagcaagttttcaggataaggttg 5057588  T
Q  148 gtcgtac 154  Q
    |||||||    
T  5057589 gtcgtac 5057595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 37438797 - 37438910
Alignment:
Q  42 ttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaat 140  Q
    |||| ||||||||||||||| ||| ||| ||||||||| |||||| |||||||| |||||||||||||||||| |||||  |||||||| ||||||| ||    
T  37438797 ttttcaaggcagtgagcatggttttcagagtgtccaatcgtgacatgattttgggaaaacgtgacacgatttttggcttgttgggcaagattttcaggat 37438896  T
Q  141 aaggttggtcgtac 154  Q
    |||||| |||||||    
T  37438897 aaggtttgtcgtac 37438910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 38746451 - 38746535
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtacg 155  Q
    |||| |||| |||||||  ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  38746451 gtgttcaatcgtgacacatttttggaaaaacgtgacacgattttcggcttgctggacaagttttcaggataaggttggtcgtacg 38746535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 213006 - 213068
Alignment:
Q  52 agtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgatttt 114  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  213006 agtgagcatggtttgcagggcgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 213068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 13487864 - 13487967
Alignment:
Q  49 ggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttgg 148  Q
    |||| |||||||  ||| |||||||  |||| ||||||||||||||| |||||    ||||||||||||||| |||||||||||||||| ||||||||||    
T  13487864 ggcaatgagcatatttttcagggtgctcaatcgtgacacgattttgggaaaacag--cacgattttcggcttgctgggcaagttttcaggataaggttgg 13487961  T
Q  149 tcgtac 154  Q
    ||||||    
T  13487962 tcgtac 13487967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 40146707 - 40146813
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 147  Q
    ||||||||| |||| ||| ||||||||||||| ||||||||||||||| |||| ||||| |||||||| ||||  ||| || |||||||| | || ||||    
T  40146707 aggcagtgaacatggttttcagggtgtccaatcgtgacacgattttgggaaaatgtgactcgattttcagcttgttggtcacgttttcaggaaaaagttg 40146806  T
Q  148 gtcgtac 154  Q
    |||||||    
T  40146807 gtcgtac 40146813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 154
Target Start/End: Original strand, 13239430 - 13239516
Alignment:
Q  68 agggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||| |||| |||||| ||||||||  |||||||||||||| || | ||| |||| ||||||||||| ||||||||||||||||    
T  13239430 agggtgttcaatcgtgacaagattttgggtaaacgtgacacgatctttgacttgctggacaagttttcaggataaggttggtcgtac 13239516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 535614 - 535667
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  535614 cgtgacacgattttcggcttgctggacaagttttcaggataaggttggtcgtac 535667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 12083731 - 12083838
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||||| ||| |||||||  |||||||| |||  |||||| |||||||||||||||||||   |||  |||| | |||||||| ||||||||    
T  12083731 aggcagtgagcatggtttacagggtgctcaattgtgtcacagttttgggaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggtt 12083830  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  12083831 ggtcgtac 12083838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 5057598 - 5057665
Alignment:
Q  145 ttggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 212  Q
    ||||||||||||| ||| |||||||| |||||||||| | ||| |||||||||||||| | |||||||    
T  5057598 ttggtcgtacgcatcaaccgtgtcacaatttgggaaaacgtgacacgattttgtccggatctgaacac 5057665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 11916525 - 11916592
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||  || |||||||||||  |||| ||| ||||||||||| |||||||||||||||||||    
T  11916525 aggcagtgagtgtggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttc 11916592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 13342771 - 13342825
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  13342771 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 13342825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 13487972 - 13488006
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 181  Q
    |||||||||||||||||||||||||||||||||||    
T  13487972 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 13488006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 19806175 - 19806225
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    |||||||||||||||||||||||||| |||||||| | ||| |||||||||    
T  19806175 ggtcgtacgcaccaaacgtgtcacgacttgggaaaacgtgacacgattttg 19806225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 25412472 - 25412526
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  25412472 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 25412526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 28751077 - 28751027
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattt 113  Q
    |||||||||||| |||| ||||||||||||||| |||||||||||| ||||    
T  28751077 tttgcagggtgttcaatcgtgacacgattttgggaaaacgtgacacaattt 28751027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 19806117 - 19806170
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||||||||||| || |||| ||||| || ||||||||||||||||    
T  19806117 cgtgacacgattttcggcttgctaggcacgtttttaggataaggttggtcgtac 19806170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 39468989 - 39468936
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||||||||||| |||| || ||||| || ||||||||||||||||    
T  39468989 cgtgacacgattttcggcttgctggacacgtttttaggataaggttggtcgtac 39468936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 3076032 - 3075976
Alignment:
Q  139 ataaggttggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattt 195  Q
    ||||||||||||||||||| |||  |||||||||||||| ||||| ||| |||||||    
T  3076032 ataaggttggtcgtacgcatcaactgtgtcacgatttggcaaatcgtgacacgattt 3075976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 9352903 - 9352995
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||| ||| ||||||| ||  ||| |||||||||||||||   ||| ||||  |||||||||| ||||||||||||||||    
T  9352903 tttgcagggtgtcaaatcgtggcacgattctgtgaaatcgtgacacgattttcaaacttgctggttaagttttcaggataaggttggtcgtac 9352995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 11181412 - 11181450
Alignment:
Q  55 gagcatgatttgcagggtgtccaattgtgacacgatttt 93  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  11181412 gagcatgttttgcagggtgtccaatcgtgacacgatttt 11181450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 30182302 - 30182352
Alignment:
Q  105 acacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  30182302 acacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 30182352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 15464984 - 15464935
Alignment:
Q  128 aagttttcagaataaggttggtcgtacgcaccaaacgtgtcacgatttgg 177  Q
    |||||||||| ||||||||||||||||| | ||| |||| ||||||||||    
T  15464984 aagttttcaggataaggttggtcgtacgtatcaatcgtgacacgatttgg 15464935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 181
Target Start/End: Original strand, 32636598 - 32636627
Alignment:
Q  152 tacgcaccaaacgtgtcacgatttgggaaa 181  Q
    ||||||||||||||||||||||||||||||    
T  32636598 tacgcaccaaacgtgtcacgatttgggaaa 32636627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 24136388 - 24136336
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||| | ||| |||||||||| |||| ||| |||||||||||||||    
T  24136388 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttc 24136336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 39284554 - 39284688
Alignment:
Q  48 aggcagtgagcatgattt-gcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||||| ||| ||||||||||| || ||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||||| ||||||||    
T  39284554 aggcagtgagcatggtttcgcagggtgtcctatcgtgacacgattttgggaaaacgtgacacaattttcggcttgctgggaaagttttcaggataaggtt 39284653  T
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaa 181  Q
    |||||||||||||||| ||||||||||||||||||    
T  39284654 ggtcgtacgcaccaaatgtgtcacgatttgggaaa 39284688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 29867556 - 29867671
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaaacgt 165  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||  ||||||||||| |||||||||||||||    
T  29867556 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcgacttgctgggcaagtttttcaagataaggttggttgtacgcaccaaacgt 29867655  T
Q  166 gtcacgatttgggaaa 181  Q
    ||||||||||||||||    
T  29867656 gtcacgatttgggaaa 29867671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 2837339 - 2837248
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||  ||| ||||| |||||||||| ||||||||||||||||    
T  2837339 tttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcaccttgctgggtaagttttcaggataaggttggtcgtac 2837248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 36318513 - 36318413
Alignment:
Q  55 gagcatgatttgcagggtgtccaattgtgacacgatttt-ggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgta 153  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||  ||||||||||||||||||||||| |||| || |||||||| |||||||||||||||    
T  36318513 gagcatgttttgcagggtgtccaatcgtgacacgatttttggggaaacgtgacacgattttcggcttgctggccacgttttcaggataaggttggtcgta 36318414  T
Q  154 c 154  Q
    |    
T  36318413 c 36318413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 35447627 - 35447436
Alignment:
Q  31 cgtgtcatgatttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag 130  Q
    ||||||||||||||  | ||||||||||||  ||| |||||||| ||||||| |||||||||||| |||| ||||||||||| |||| ||   |||||||    
T  35447627 cgtgtcatgattttcta-ggcagtgagcattgttttcagggtgttcaattgtaacacgattttgggaaaatgtgacacgattatcggtttgtcgggcaag 35447529  T
Q  131 ttttcagaataaggtt------------ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 212  Q
    ||||||  ||||||||            |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| | |||||||    
T  35447528 ttttcaagataaggttgctcgtaccttgggtcgtacgcaccaaacgtgtcacga-ttgggaaatcgtgacacgattttgtccggatctgaacac 35447436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 36988567 - 36988479
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| |||||| |||||||| |||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  36988567 cagggtgtccaatcgtgacatgattttgggaaaacgtgacacgattttcgacttgctgggcaagtttttcaggataaggttggtcgtac 36988479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 6595486 - 6595378
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtacgcaccaaacgt 165  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||||| ||||| |||||| || ||||||| |||||||| |||||||||| ||| | |    
T  6595486 cagggtgtccaatcgtgacacaattttgggaaaacgtgacacgatttttggcttgctgggctagattttcaggataaggttagtcgtacgcatcaatctt 6595387  T
Q  166 gtcacgatt 174  Q
    | |||||||    
T  6595386 gacacgatt 6595378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 17863844 - 17863955
Alignment:
Q  42 ttttgaaggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaat 140  Q
    |||| ||||||||||||||| ||| ||||||||||||| ||||||  ||||||| ||||||||||||||||||   ||| ||||||||| |||| || ||    
T  17863844 ttttcaaggcagtgagcatggttttcagggtgtccaatcgtgacataattttgggaaaacgtgacacgattttttacttgctgggcaagtttttgaggat 17863943  T
Q  141 aaggttggtcgt 152  Q
    ||||||||||||    
T  17863944 aaggttggtcgt 17863955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 33528177 - 33528284
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||||| |||||||||||  |||| ||| ||||||||||| |||||||||||||||||||   ||| ||||| | |||||||||||||||||    
T  33528177 aggcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaacttgctgggtacgttttcagaataaggtt 33528276  T
Q  147 ggtcgtac 154  Q
    | ||||||    
T  33528277 gatcgtac 33528284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 45726464 - 45726530
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgatttt 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||  ||| |||||||||||||    
T  45726464 aggcagtgagcatgattttcagggtgtccaattgtgacacgattttgggcaaatgtgacacgatttt 45726530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 34389375 - 34389287
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||   ||| ||||| | |||||||| ||||||||||||||||    
T  34389375 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttcaaacttgctgggtacgttttcaggataaggttggtcgtac 34389287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 154
Target Start/End: Original strand, 45099432 - 45099519
Alignment:
Q  68 agggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||| ||||||| ||||||| |||  ||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  45099432 agggtgtccaatcgtgacacaattttgggaaattgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 45099519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 20522746 - 20522659
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||  |||| ||| ||||||||||  |||||||||||||||||||  ||| ||||||| |||||||| ||||||||||||||||    
T  20522746 cagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaacttgctgggcacgttttcaggataaggttggtcgtac 20522659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 14698563 - 14698669
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 147  Q
    |||||||||||||||||| | || ||| || | ||  ||||||||||| |||||||||||||||||||  |||  ||||||  ||||||| |||||||||    
T  14698563 aggcagtgagcatgattttctggatgttcattcgtatcacgattttgggaaaacgtgacacgattttcaacttgttgggcacattttcaggataaggttg 14698662  T
Q  148 gtcgtac 154  Q
    |||||||    
T  14698663 gtcgtac 14698669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 23078025 - 23078131
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggtt 146  Q
    ||||||||||||||  ||| ||||||  |||||||| ||||||||||| |||||||||||||||||||   |||  |||| | |||||||| ||||||||    
T  23078025 aggcagtgagcatggattgtagggtgctcaattgtgtcacgattttgggaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggtt 23078124  T
Q  147 ggtcgta 153  Q
    |||||||    
T  23078125 ggtcgta 23078131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 13569874 - 13569807
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||||||||||||| |||||||||||  |||| ||| ||  |||||||||||||||||||||||||||    
T  13569874 aggcagtgagcatggtttgcagggtgctcaatcgtgtcataattttggaaaaacgtgacacgattttc 13569807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 21630489 - 21630382
Alignment:
Q  48 aggcagtgagcatgatttgc-agggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||||| |||   ||||||  |||| ||| ||| ||||||| ||||| |||||||||||||  ||| ||||||| |||||||| ||||||||    
T  21630489 aggcagtgagcatggttttttagggtgctcaatcgtgtcacaattttgggaaaacatgacacgattttcaacttgctgggcacgttttcaggataaggtt 21630390  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  21630389 ggtcgtac 21630382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 8389703 - 8389768
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||||||||| |||||||||||||||| |  | ||| ||||||||||| |||||||||||||||||||    
T  8389703 aggcagtgagtatgatttgcagggtgttc--tcgtgtcacgattttgggaaaacgtgacacgattttc 8389768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 2334875 - 2334821
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  2334875 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 2334821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 4503590 - 4503536
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  4503590 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 4503536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 10706825 - 10706873
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||||||  |||||||| ||||||||||| |||||||||||||||||||    
T  10706825 cagggtgctcaattgtgtcacgattttgggaaaacgtgacacgattttc 10706873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 28258746 - 28258838
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||| ||| ||| ||||||  ||| |||||||||||||||   ||| ||||  |||||||||| ||||||||||||||||    
T  28258746 tttgcagggtgtcaaatcgtggcacaattttgtgaaatcgtgacacgattttcaaacttgctggttaagttttcaggataaggttggtcgtac 28258838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 39483401 - 39483313
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||  |||| ||| ||||||||||| |||||||||||||||||||   |||  |||| | |||||||| ||||||||||||||||    
T  39483401 cagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgattttcaaacttgttgggtacgttttcaggataaggttggtcgtac 39483313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 5723712 - 5723658
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| |||| |||| ||||||| ||||||||||||||||    
T  5723712 cgtgacacgatttttggcttgctggacaagattttcaggataaggttggtcgtac 5723658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 17865684 - 17865614
Alignment:
Q  85 cacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||| |||| ||||||||||||||   ||| ||||| | |||||||| ||||||||||||||||    
T  17865684 cacgattttgggaaaatgtgacacgattttcaaacttgctgggtacgttttcaggataaggttggtcgtac 17865614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 33118567 - 33118517
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttgggaaatcatgatacgattttg 197  Q
    ||||||||||||||| |||||||||||||||  || ||||| |||||||||    
T  33118567 ggtcgtacgcaccaatcgtgtcacgatttggacaaacatgacacgattttg 33118517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 36206123 - 36206069
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||||    
T  36206123 cgtgacacgatttttggcttgctgggaaagattttcaggataaggttggtcgtac 36206069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 2334804 - 2334767
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattt 113  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  2334804 caatcgtgacacgatttgggaaaaacgtgacacgattt 2334767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 25410170 - 25410118
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||| | ||| |||||||||| |||| ||| |||||||||||||||    
T  25410170 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttc 25410118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 30833017 - 30833069
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||| | ||| |||||||||| |||| ||| |||||||||||||||    
T  30833017 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttc 30833069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 20920 - 20819
Alignment:
Q  53 gtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgt 152  Q
    ||||||||| |||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||  |||| ||||||| |||||||||||||||||    
T  20920 gtgagcatgttttgcagggtgtccaatcatgacacgattttgggaaaacgtgacacgattttcggcttgttgggaaagtttttagaataaggttggtcgt 20821  T
Q  153 ac 154  Q
    ||    
T  20820 ac 20819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 212
Target Start/End: Original strand, 21593110 - 21593282
Alignment:
Q  52 agtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcg 151  Q
    |||||||||| ||| ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||| || |||||||||||||    
T  21593110 agtgagcatggttttcagggtgtccaatcgtgacacaattttgggaaaacgtgacacgattttcggcttgctgggcatgtttttaggataaggttggtcg 21593209  T
Q  152 ta------------cgcaccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacac 212  Q
    ||            || ||||| |||||||||||||||||||   ||| |||||||||||||| |||||||||    
T  21593210 taccttgggtcgttcgtaccaaccgtgtcacgatttgggaaaatgtgacacgattttgtccggatatgaacac 21593282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 9183500 - 9183414
Alignment:
Q  68 agggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||    
T  9183500 agggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttttgacttgctgggcaagttttcaggataaggttggtcgtac 9183414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 3809414 - 3809245
Alignment:
Q  68 agggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac------------g 155  Q
    |||||| ||||| |||||||||||||||  |||||||||||||||||||||||   ||| |||||||||| ||||||||||||||||            |    
T  3809414 agggtgcccaatcgtgacacgattttggggaaacgtgacacgattttcggctt---gggaaagttttcaggataaggttggtcgtaccttgggtcgtacg 3809318  T
Q  156 caccaaacgtgtcacgatttgggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
     |||||| |||||| ||||||||||||| |||||||||||||||||| | |||||||| |||| |||||||||    
T  3809317 taccaaatgtgtcatgatttgggaaatcgtgatacgattttgtccggatctgaacacattataagcattcttt 3809245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 22964226 - 22964135
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||| |||| |||| |||||||||| |||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||    
T  22964226 tttgcagggtgttcaatcgtgatacgattttgggaaaacgtgacacgatttttggcttgctggacaagttttcaggataaggttggtcgtac 22964135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 23824167 - 23824258
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||| |||| |||| |||||||||| |||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||    
T  23824167 tttgcagggtgttcaatcgtgatacgattttgggaaaacgtgacacgatttttggcttgctggacaagttttcaggataaggttggtcgtac 23824258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 603719 - 603642
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgta 153  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||||||| |||||    
T  603719 caatcgtgacacgattttgggaaaacgtgacatgattttcggcttgctgggcaagttttcaggataaggttgatcgta 603642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 31980061 - 31979954
Alignment:
Q  48 aggcagtgagcatgatttg-cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggtt 146  Q
    |||||||||||||| |||  |||||||  |||| ||| |||||||||||||||||||||||| ||||||  ||| ||||||| |||||||| ||||||||    
T  31980061 aggcagtgagcatggtttttcagggtgatcaatcgtgtcacgattttggaaaaacgtgacacaattttcaacttgctgggcacgttttcaggataaggtt 31979962  T
Q  147 ggtcgtac 154  Q
    ||||||||    
T  31979961 ggtcgtac 31979954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 31086025 - 31086092
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    |||||||||||||| |||||||||||  |||| ||| |||||||||||||||||||||||||||||||    
T  31086025 aggcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttggaaaaacgtgacacgattttc 31086092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 5407396 - 5407312
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||||||| ||||||||||||||||||| ||||||||  |||| ||||| ||||||||| ||||||  ||||||||||||||||    
T  5407396 gtgtccaatcgtgacacgattttggaaaatcgtgacacattttttggcttgctgggcaagattttcaagataaggttggtcgtac 5407312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 5411721 - 5411637
Alignment:
Q  71 gtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    ||||||||| ||||||||||||||||||| ||||||||  |||| ||||| ||||||||| ||||||  ||||||||||||||||    
T  5411721 gtgtccaatcgtgacacgattttggaaaatcgtgacacattttttggcttgctgggcaagattttcaagataaggttggtcgtac 5411637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 17759415 - 17759494
Alignment:
Q  68 agggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttg 147  Q
    |||||| ||||  |||||||||||||||  ||||||||||| ||||||||||| |||| ||||||||||| |||||||||    
T  17759415 agggtgcccaaccgtgacacgattttggggaaacgtgacacaattttcggcttgctggacaagttttcaggataaggttg 17759494  T

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Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 5017050 - 5017156
Alignment:
Q  50 gcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggca-agttttcagaataaggttg 147  Q
    |||||||||||| |||||||||||  |||| ||| ||||||||||  |||||||||||||||||||   ||||||||| | | ||||||| |||||||||    
T  5017050 gcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgattttcaaacttactgggtacatttttcaggataaggttg 5017149  T
Q  148 gtcgtac 154  Q
    |||||||    
T  5017150 gtcgtac 5017156  T

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Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 24714872 - 24714809
Alignment:
Q  91 tttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||||||||||||||||  ||| ||||||| |||||||| ||||| ||||||||||    
T  24714872 tttggaaaaacgtgacacgattttcaacttgctgggcacgttttcaggataagattggtcgtac 24714809  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 26661422 - 26661495
Alignment:
Q  81 gtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||||| |||| |||||| |||||||| ||| |||| |  |||||||| ||||||||||||||||    
T  26661422 gtgacacgattttgggaaaatgtgacaagattttcgacttgctggactcgttttcaggataaggttggtcgtac 26661495  T

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Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 26767393 - 26767466
Alignment:
Q  81 gtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||||| |||| |||||| |||||||| ||| |||| |  |||||||| ||||||||||||||||    
T  26767393 gtgacacgattttgggaaaatgtgacaagattttcgacttgctggactcgttttcaggataaggttggtcgtac 26767466  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 5413906 - 5413852
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  5413906 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 5413852  T

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Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 5571846 - 5571924
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||| ||| ||||||||||  |||||||||||||||||||  ||| ||||||| ||||| ||  |||||||||||||||    
T  5571846 caatcgtgtcacgattttgagaaaacgtgacacgattttcaacttgctgggcacgtttttaggttaaggttggtcgtac 5571924  T

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Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 24435566 - 24435632
Alignment:
Q  88 gattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||| |||||||||||||||||||  |||  | |||| |||||||| ||||||||||||||||    
T  24435566 gattttgggaaaacgtgacacgattttcaacttgtttggcacgttttcaggataaggttggtcgtac 24435632  T

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Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 30834995 - 30834941
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  30834995 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 30834941  T

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Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 33160812 - 33160758
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  33160812 cgtgacacgatttttggcttgctgggcaagattttcaggataaggttggtcgtac 33160758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 5757047 - 5757139
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||| |||  |||||||||  ||| |||||||||||||||   ||| ||||  |||||||||| ||||||||||||||||    
T  5757047 tttgcagggtgtcaaatcgtggtacgattttgtgaaatcgtgacacgattttcaaacttgctggttaagttttcaggataaggttggtcgtac 5757139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 21272558 - 21272645
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtc 150  Q
    |||| |||||||||||| |||||||||||||||  || |||| ||||||||| | | |  | |||| |||||||| ||||||||||||    
T  21272558 tttgaagggtgtccaatcgtgacacgattttgggtaatcgtgtcacgatttttgacatgtttggcacgttttcaggataaggttggtc 21272645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 5406656 - 5406602
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| |||| || ||||||||||||||||    
T  5406656 cgtgacacgatttttggcttgctgggcaagatttttaggataaggttggtcgtac 5406602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 5410981 - 5410927
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||||||| |||| || ||||||||||||||||    
T  5410981 cgtgacacgatttttggcttgctgggcaagatttttaggataaggttggtcgtac 5410927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 16452898 - 16452844
Alignment:
Q  101 cgtgacacgattttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||||    
T  16452898 cgtgacacgatttttggcttgctgggaaagattttcaggataaggttggtcgtac 16452844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 18234608 - 18234520
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcgg-cttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||  |||| ||| || |||||||| ||||||||| |||||||||   ||| ||||| | |||||||| ||||||||||||||||    
T  18234608 cagggtgctcaatcgtgtcaggattttgggaaaacgtgatacgattttcaaacttgctgggtacgttttcaggataaggttggtcgtac 18234520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 22709549 - 22709497
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc 115  Q
    ||||||||||| | ||| |||||||||| |||| ||| |||||||||||||||    
T  22709549 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgattttc 22709497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 23896861 - 23896769
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcgg-cttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||| |||  |||||||||  ||| ||||||||||||||    ||| ||||  |||||||||| ||||||||||||||||    
T  23896861 tttgcagggtgtcaaatcgtggtacgattttgtgaaatcgtgacacgatttttaaacttgctggttaagttttcaggataaggttggtcgtac 23896769  T

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Target: scaffold0176 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 17767 - 17668
Alignment:
Q  55 gagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||| ||||||||||||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||||||| |||||  ||||||||||||||||    
T  17767 gagcatgttttgcagggtgtccaaccgtgacacgattttgggaaaacgtgacacgatttttggcttgctgggcaagctttcatgataaggttggtcgtac 17668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 434217 - 434297
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacga-ttttcggcttactgggcaag-ttttcagaataaggttggtcgtac 154  Q
    |||| ||||||||||||||| ||| |||||||||| |||| ||||| ||||||||| ||||||| ||||||||||||||||    
T  434217 caatcgtgacacgattttgggaaatcgtgacacgattttttggcttgctgggcaagattttcaggataaggttggtcgtac 434297  T

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Target: scaffold0466 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 6878 - 6960
Alignment:
Q  147 ggtcgtacgcaccaaacgtgtcacgatttg-ggaaatcatgatacgattttgtccgggtatgaacacaatatatgcattcttt 228  Q
    ||||||||||||||| | |||||||||||| ||||| | |||||||||||||  ||| |||||||||  ||||||||||||||    
T  6878 ggtcgtacgcaccaaccatgtcacgatttgtggaaaacgtgatacgattttgctcggatatgaacactttatatgcattcttt 6960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 6788 - 6833
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgatttt 93  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  6788 aggcagtgagcatggtttgcagggtgtccaatcgtgacacgatttt 6833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 36401 - 36493
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||| ||| ||||||||||  |||||||||||| ||||||   ||| ||||| | |||||||| ||||||||||||||||    
T  36401 tttgcagggtgtcaaatcgtggcacgattttgtgaaaacgtgacacaattttcaaacttgctgggtacgttttcaggataaggttggtcgtac 36493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 114263 - 114350
Alignment:
Q  67 cagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcggcttactgggc-aagttttcagaataaggttggtcgtac 154  Q
    ||||| |||||||  ||||||||| |||| |||||||||||||||||| ||||| |||||| || ||||||| ||||||||||| ||||    
T  114263 cagggcgtccaatcatgacacgatattgggaaaacgtgacacgatttt-ggcttgctgggcaaaattttcaggataaggttggtggtac 114350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 45730 - 45635
Alignment:
Q  60 tgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||||||||||||||| ||| ||| ||||||| ||  ||| |||||||||||||||   ||| ||||  |||||||||| ||||||||||||||||    
T  45730 tgatttgcagggtgtcaaatcgtggcacgattctgtgaaatcgtgacacgattttcaaacttgctggctaagttttcaggataaggttggtcgtac 45635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 3009 - 2930
Alignment:
Q  76 caattgtgacacgattttggaaaaacgtgacacgattttc-ggcttactgggcaagttttcagaataaggttggtcgtac 154  Q
    |||| ||| ||||||||||| |||||||||| ||||||||   ||| ||||| | |||||||| ||||||||||||||||    
T  3009 caatcgtgtcacgattttgggaaaacgtgacccgattttcaaacttgctgggtatgttttcaggataaggttggtcgtac 2930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 132848 - 132940
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcgg-cttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||| ||||| ||| ||||||||||||||   || ||||||| |||||||   ||| ||||  |||||||||| ||||||||||||||||    
T  132848 tttgcagtgtgtcaaatcgtgacacgattttgtggaatcgtgacatgattttcaaacttgctggttaagttttcaggataaggttggtcgtac 132940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 86131 - 86066
Alignment:
Q  48 aggcagtgagcatgatttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgatttt 114  Q
    |||||| ||||||| |||||||||||  ||||  || ||||||||||| ||||||||||||||||||    
T  86131 aggcagggagcatggtttgcagggtgctcaatcatg-cacgattttgggaaaacgtgacacgatttt 86066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 1179 - 1271
Alignment:
Q  63 tttgcagggtgtccaattgtgacacgattttggaaaaacgtgacacgattttcgg-cttactgggcaagttttcagaataaggttggtcgtac 154  Q
    ||||||||||||| ||| |||  |||||||||  ||| ||||||||||||||    ||| ||||  |||||||||| ||||||||||||||||    
T  1179 tttgcagggtgtcaaatcgtggtacgattttgtgaaatcgtgacacgatttttaaacttgctggttaagttttcaggataaggttggtcgtac 1271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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