View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20880_low_2 (Length: 387)
Name: NF20880_low_2
Description: NF20880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20880_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 4 - 373
Target Start/End: Original strand, 49174783 - 49175169
Alignment:
| Q |
4 |
tatatatatcttttatctctgaaaataagatgtttcttaaagtagttctttaatattttttcagtcccaatatttaacaaattatcgtctttttcctttc |
103 |
Q |
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| T |
49174783 |
tatatatatcttttatctctgaaaataagatgtttcttaaagtagttctttaatattttttcagtcccaatatttaacaaattatcgtctttttcctttc |
49174882 |
T |
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| Q |
104 |
nnnnnnnnnnnnnnnnnttaacgtctttatatttttcattattgtgcattttccttttattttaaagaatnnnnnnnn-----------taaaggattgc |
192 |
Q |
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| T |
49174883 |
aaaaaataaaataaaaattaacgtctttatatttttcattattgtgcattttccttttattttaaagaataaaataaaataaaataaaataaaggattgc |
49174982 |
T |
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| Q |
193 |
tgttctttagtgcgcattcgagtgattctactttgtaaagtcatgacatgagggtgaaaacagggttcataaactcttacagttgtccttggttgtagga |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49174983 |
tgttctttagtgcgcattcgagtgattctactttgtaaagtcatgacatgagggtgaaaacagggttcataaactcttacagttgtccttggttgtagga |
49175082 |
T |
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| Q |
293 |
cgaatatagtaagcctgtgacataccc------ttcagacgtggtcacaatttgaaaattttgggtggtctgtttttattttatcta |
373 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49175083 |
cgaatatagtaagcctgtgacatacccttcagattcagacgtggtcacaatttgaaaattttgggtggtctgtttttattttatcta |
49175169 |
T |
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