View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20880_low_22 (Length: 211)
Name: NF20880_low_22
Description: NF20880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20880_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 3421744 - 3421909
Alignment:
| Q |
35 |
cacagatcacagtgacatttgttaacggtgtggaagaagcgtttgatgcaacatcaacaccggttcaccgtataacgaagatgattctggaaaagggcca |
134 |
Q |
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| T |
3421744 |
cacagatcacagtgacatttgttaatggtgtggaagaagcgtttgatgcaacatcaacaccggttcaccgtataacgaggatgattctggaaaagggcca |
3421843 |
T |
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| Q |
135 |
gctccttgagaccgaacaaatgtttcgtgaagcaggggaacaatggcctgttatcattcctgatga |
200 |
Q |
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| T |
3421844 |
gctccttgagaccgaacaaatgtttcgtgaagcaggggaacaatggcctgttatcattcccgatga |
3421909 |
T |
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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 52948267 - 52948430
Alignment:
| Q |
37 |
cagatcacagtgacatttgttaacggtgtggaagaagcgtttgatgcaacatcaacaccggttcaccgtataacgaagatgattctggaaaagggccagc |
136 |
Q |
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|||||||| || || || || ||||| ||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
52948267 |
cagatcaccgtcacgttcgtcaacggcgtggaagaagctttcgatgctacatcaacaccggttcaccgtataaccaagatgattctggaaaagggtcagt |
52948366 |
T |
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| Q |
137 |
tccttgagaccgaacaaatgtttcgtgaagcaggggaacaatggcctgttatcattcctgatga |
200 |
Q |
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| T |
52948367 |
tactcgaaactgaacagatgttccgtgaagctggagaacaatggcctgttatcatacctgatga |
52948430 |
T |
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