View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20880_low_5 (Length: 295)
Name: NF20880_low_5
Description: NF20880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20880_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 6097253 - 6097035
Alignment:
| Q |
18 |
cttgccacttgagacaggtatgattctattttgattctggtaatagattgtgctgttgaaaattgataatttattctgatacttatatggatgtattgcc |
117 |
Q |
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| T |
6097253 |
cttgccacttgagacaggtatgattctattttgattcgggtaatagattgtgctgttgaaaattgataatttattctgatacttatatggatgtattgtc |
6097154 |
T |
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| Q |
118 |
caaaatatcataattttgcacctaaacattacaggataagttttacgagttataagacaattcccgcgtcatgacttcatgacttagggaatttattaga |
217 |
Q |
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| T |
6097153 |
caaaatatcataattttgcacctaaacattacaggataagttttacgagttataagacaattcccgcgtcatgacttcatgacttagggaatttattaga |
6097054 |
T |
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| Q |
218 |
atagaaaggaataacccaa |
236 |
Q |
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| T |
6097053 |
atagaaaggaataacccaa |
6097035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 6096864 - 6096820
Alignment:
| Q |
233 |
ccaaggtgtgggcactaggagttatgtggatttttgaatgaactt |
277 |
Q |
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| T |
6096864 |
ccaaggtgtgggcactaggagttatgtggatttttgaatgaactt |
6096820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 27766451 - 27766374
Alignment:
| Q |
159 |
tttacgagttataagacaattcccgcgtcatgacttcatgacttagggaatttattagaatagaaaggaataacccaa |
236 |
Q |
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| T |
27766451 |
tttacgagtcataagacaattcccgcgtcatgacttcatgacttagggaattttttagaatagaaaggaataacccaa |
27766374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 3077193 - 3077264
Alignment:
| Q |
65 |
ttgtgctgttgaaaattgataatttattctgatacttatatggatgtattgcccaaaatatcataattttgc |
136 |
Q |
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| T |
3077193 |
ttgtgctattgaaagttgagaatttattctgatattgatatggatgtatttcccaaaacatcagaattttgc |
3077264 |
T |
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