View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20881_low_1 (Length: 891)
Name: NF20881_low_1
Description: NF20881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20881_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 383
Target Start/End: Original strand, 17907003 - 17907372
Alignment:
| Q |
21 |
taccttctcggggaagattgcaaattgactatggagcatattagtagattc-------aatgtggagtgtagtgagcggaagcgtaaggagttccacaag |
113 |
Q |
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| T |
17907003 |
taccttctcggggaagattgcaaattgactatggagcatatcagaagattcaatattcaatgtggagtgcagtggggggaagcgtaaggagttccacaag |
17907102 |
T |
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| Q |
114 |
ttgtagttgttccctttatcatttacaagaacaacattctcgtggtattcttccctcaaaccaaaatttatcctaacatgggaatacataaaaatatgtc |
213 |
Q |
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| T |
17907103 |
ttgtagttgttccctttatcatttacaagaacaacattctcgtggtattcttcgctcaaaccaaactttatcctaacatgggaatacataaaaatatgtc |
17907202 |
T |
|
| Q |
214 |
tccatatttataggttctattggcctctgcaagaggttacgaaaaccgatctaatgaacattagataataagtagatgaattacttgttaaattcattaa |
313 |
Q |
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| T |
17907203 |
tccatatttaaaggttctattggcctctgcaagaggttacgaaaaccgatctaacgaacattagacaataagtagacgaattacttgctaaattcattaa |
17907302 |
T |
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| Q |
314 |
gaggttcaagaaggtttttaggaaatgctcgatccaatttcttaacattgaatatatgattaatgacatg |
383 |
Q |
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| T |
17907303 |
gaggttcaagaaggtttttaggaaatgctcgatccaatttcttaacattgaatatatgattaatgacatg |
17907372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 560 - 872
Target Start/End: Original strand, 17913944 - 17914249
Alignment:
| Q |
560 |
aaactttgaaaaccctaatcatatatataccttccttattcgcgcttctctcttactctcttcttcatagcaaattctcccttctcctagttaatccctc |
659 |
Q |
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| T |
17913944 |
aaactttgaaaaccctaatcatata----ccttccttgttcgcgcttctctcttactctcgtc---atagcaaattctcccttctcctagttaatccctc |
17914036 |
T |
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| Q |
660 |
cgccatgtctcctcagcaacctatctgtgttgatccaaaaatctggcagtgctgcgccggcgctgctgttaaaattccaaaactacattctcatgtttac |
759 |
Q |
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| T |
17914037 |
cgccatgtctcctcagcaacctatccgtgttgatccaaaaatctggcagtgctgcgccggcgctgccgttaaaattccaaaactaaattctcatgtttac |
17914136 |
T |
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| Q |
760 |
tacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgatcgttcccgtcaattcattccctgcaccgtct |
859 |
Q |
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| T |
17914137 |
tacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgaccgttcccgtcaattcattccctgcaccgtct |
17914236 |
T |
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| Q |
860 |
ccacggttaatct |
872 |
Q |
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| T |
17914237 |
ccacggttaatct |
17914249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 643 - 872
Target Start/End: Complemental strand, 17977139 - 17976913
Alignment:
| Q |
643 |
ctcctagttaatccctccgccatgtctcctcagcaacctatctgtgttgatccaaaaatctggcagtgctgcgccggcgctgctgttaaaattccaaaac |
742 |
Q |
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| T |
17977139 |
ctccttgttaatctctccgccatgtcttctcagcaacg---ccgtgttgatcagaaaatctggcagtgctgtgcaggcagttccgttaaaattccaaaac |
17977043 |
T |
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| Q |
743 |
tacattctcatgtttactacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgatcgttcccgtcaatt |
842 |
Q |
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| T |
17977042 |
tatattctcatgtttactacttcccattagggcacttagaacacatatgtccatccccaaaccctaacacactgtcccatcttgaccgttcccgtccatt |
17976943 |
T |
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| Q |
843 |
cattccctgcaccgtctccacggttaatct |
872 |
Q |
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| T |
17976942 |
cattctctgcacagtctccgcggttgatct |
17976913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 379 - 448
Target Start/End: Original strand, 17910391 - 17910460
Alignment:
| Q |
379 |
acatgcacccacatctaaaagagactggttgggtaagtgtgtcatgatttgaatgaaaaggcttcccaag |
448 |
Q |
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| T |
17910391 |
acatgcacccacatctaaaagatactggttgggcaagtgtgttatgatttgaatgaaaaggcttcccaag |
17910460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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